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Pull requests: mskcc/vcf2maf

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Pull requests list

updated isoform_overrides_uniprot for H3F3A & H3F3B
#114 by jjgao was merged Feb 21, 2017 Loading…
1
Add snpEff sequence ontology variant type for intergenic region
#5 by kdaily was closed Jul 9, 2014 Loading…
1
Add a real single sample test VCF and MAF
#7 by ckandoth was merged Dec 2, 2014 Loading…
switched to snpEff 4.1, AA length, Variant_Classification, dbSNP, SIFT, ...
#8 by ckandoth was closed Aug 14, 2015 Loading…
1
this add the ExAC annotation to the maf
#23 by apastore was closed Oct 23, 2015 Loading…
2
Create isoform_overrides_uniprot
#25 by jjgao was merged Oct 30, 2015 Loading…
@jjgao
Update isoform_overrides_uniprot
#26 by jjgao was merged Oct 31, 2015 Loading…
@jjgao
fixed the truncated file
#27 by jjgao was merged Nov 3, 2015 Loading…
@jjgao
Add a Bitdeli Badge to README
#31 by bitdeli-chef was merged Nov 19, 2015 Loading…
1
Compatibility with new versions of VEP
#50 by OvoiDs was merged Apr 21, 2016 Loading…
@ckandoth
3
Adding a dockerfile using VEP 85, after 1.6.7 release.
#64 by mattions was merged Aug 11, 2016 Loading…
@ckandoth
9
Set executable bit on scripts
#69 by sambrightman was closed Aug 29, 2016 Loading…
@ckandoth
8
Describe default transcript selection criteria
#1 by ckandoth was merged Mar 19, 2014 Loading…
added tmp-dir option for vcf2maf.pl to control vep output
#85 by adamstruck was merged Oct 14, 2016 Loading…
@ckandoth
1
fix #118
#119 by raylim was closed May 2, 2017 Loading…
@ckandoth
1
updated transcript for ASXL2
#127 by jjgao was merged Aug 7, 2017 Loading…
@ckandoth @jjgao @aijazsyed
3
vcf2maf with VEP latest version
#143 by alezanalp was closed Feb 27, 2018 Loading…
@ckandoth
2
Add new test for MAF
#157 by inodb was closed Feb 26, 2018 Loading…
@ckandoth
1
removed redundant mapping in uniprot_override
#164 by jjgao was merged Apr 4, 2018 Loading…
1
Update uniprot isoform list to only have biomart ensembl v91 genes
#166 by inodb was merged May 9, 2018 Loading…
8
fixed isoform assignment for HIST1H4A
#183 by jjgao was merged Jul 26, 2018 Loading…
3
Add gene EP400
#188 by zhx828 was merged Aug 16, 2018 Loading…
Add gene NCOR2
#212 by zhx828 was merged Jan 25, 2019 Loading…
@ckandoth
Fixed handling of allele depths for Indels called by Strelka
#215 by sebastianlange was merged Mar 17, 2019 Loading…
@ckandoth
2
Add snpeff annotation
#363 by kmavrommatis was merged Dec 9, 2024 Loading…
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