diff --git a/Cargo.lock b/Cargo.lock index 90e0e52..728de0d 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -25,47 +25,48 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anstream" -version = "0.6.13" +version = "0.6.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d96bd03f33fe50a863e394ee9718a706f988b9079b20c3784fb726e7678b62fb" +checksum = "418c75fa768af9c03be99d17643f93f79bbba589895012a80e3452a19ddda15b" dependencies = [ "anstyle", "anstyle-parse", "anstyle-query", "anstyle-wincon", "colorchoice", + "is_terminal_polyfill", "utf8parse", ] [[package]] name = "anstyle" -version = "1.0.6" +version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8901269c6307e8d93993578286ac0edf7f195079ffff5ebdeea6a59ffb7e36bc" +checksum = "038dfcf04a5feb68e9c60b21c9625a54c2c0616e79b72b0fd87075a056ae1d1b" [[package]] name = "anstyle-parse" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c75ac65da39e5fe5ab759307499ddad880d724eed2f6ce5b5e8a26f4f387928c" +checksum = "c03a11a9034d92058ceb6ee011ce58af4a9bf61491aa7e1e59ecd24bd40d22d4" dependencies = [ "utf8parse", ] [[package]] name = "anstyle-query" -version = "1.0.2" +version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e28923312444cdd728e4738b3f9c9cac739500909bb3d3c94b43551b16517648" +checksum = "a64c907d4e79225ac72e2a354c9ce84d50ebb4586dee56c82b3ee73004f537f5" dependencies = [ "windows-sys 0.52.0", ] [[package]] name = "anstyle-wincon" -version = "3.0.2" +version = "3.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cd54b81ec8d6180e24654d0b371ad22fc3dd083b6ff8ba325b72e00c87660a7" +checksum = "61a38449feb7068f52bb06c12759005cf459ee52bb4adc1d5a7c4322d716fb19" dependencies = [ "anstyle", "windows-sys 0.52.0", @@ -349,9 +350,9 @@ checksum = "98cc8fbded0c607b7ba9dd60cd98df59af97e84d24e49c8557331cfc26d301ce" [[package]] name = "colorchoice" -version = "1.0.0" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" +checksum = "0b6a852b24ab71dffc585bcb46eaf7959d175cb865a7152e35b348d1b2960422" [[package]] name = "colored" @@ -714,6 +715,12 @@ dependencies = [ "windows-sys 0.52.0", ] +[[package]] +name = "is_terminal_polyfill" +version = "1.70.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f8478577c03552c21db0e2724ffb8986a5ce7af88107e6be5d2ee6e158c12800" + [[package]] name = "itertools" version = "0.10.5" @@ -1057,9 +1064,9 @@ dependencies = [ [[package]] name = "noodles" -version = "0.70.0" +version = "0.71.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5c7777c4301ec50202f778c15d73b88c30f9240a074f9b9a98fe7babfa5bfc8" +checksum = "2029b57a53b82f4f6de67b22995f2edf43013ca36d488f6d1ea45143aa69ab56" dependencies = [ "noodles-bam", "noodles-bgzf", @@ -1072,9 +1079,9 @@ dependencies = [ [[package]] name = "noodles-bam" -version = "0.60.0" +version = "0.61.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "880f71c52dab49e073361e0427610e07eccea07ff48a2ecd8f133c648cb115d8" +checksum = "786fd4a0c30579e2f0fa39edbe83f395e25848a8056cfdd9714665e664d11884" dependencies = [ "bit-vec", "bstr", @@ -1089,9 +1096,9 @@ dependencies = [ [[package]] name = "noodles-bgzf" -version = "0.28.0" +version = "0.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eff82b0fb78c11947b29ef50e8ddf0093813fa9e613af0e13dc53fc12b2dc3ea" +checksum = "7dba1c82e9f92c00b23538359e5d191dff7ccb300cf659ee3a835af65c3cd143" dependencies = [ "byteorder", "bytes", @@ -1107,9 +1114,9 @@ checksum = "7336c3be652de4e05444c9b12a32331beb5ba3316e8872d92bfdd8ef3b06c282" [[package]] name = "noodles-cram" -version = "0.60.0" +version = "0.61.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0f7ea5956fad57e0c09a0dc84bb0536606434ef82112035d113745215ba71ebc" +checksum = "3c647b4ad9989372cacfa53aac15638d054d7243bcc7216abc0463d8fa89ce85" dependencies = [ "bitflags", "bstr", @@ -1128,9 +1135,9 @@ dependencies = [ [[package]] name = "noodles-csi" -version = "0.32.0" +version = "0.33.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "938d7d865a3fbb079c7855e76eb1ef0be5d285dc039fa7776622225c7f708411" +checksum = "857fcce273172c7ec188369c0e745e95aefc477a67262133862c9ef3375e56b9" dependencies = [ "bit-vec", "byteorder", @@ -1141,9 +1148,9 @@ dependencies = [ [[package]] name = "noodles-fasta" -version = "0.35.0" +version = "0.36.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "59f7006eff28b06d2c2b1129f9dd2ba637163b92068617060433f22f557e6ce2" +checksum = "80fb1a1bd49879db277665dfc2a714de9afdd9ab231800adfb4e9a453d311ea5" dependencies = [ "bytes", "memchr", @@ -1162,9 +1169,9 @@ dependencies = [ [[package]] name = "noodles-sam" -version = "0.57.0" +version = "0.58.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6b0598e959a0e56fc60f11b3bc63bf11c332a530cb54883196c0eab1bd0d4b8a" +checksum = "50a3f7dd522280b5f4d72e0a66f9d0350c0f7f5b1c3a8cbc8ff6be6b28df9fa8" dependencies = [ "bitflags", "bstr", diff --git a/Cargo.toml b/Cargo.toml index ba1f8bc..93ae7b8 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -26,7 +26,7 @@ min-max-heap = { git = "https://github.com/tov/min-max-heap-rs", branch = "maste slab = "0.4" anyhow = "1.0" mimalloc = { version = "0.1", default-features = false } -noodles = { version = "0.70", features = ["bam", "bgzf", "core", "cram", "fasta", "fastq", "sam"] } +noodles = { version = "0.71", features = ["bam", "bgzf", "core", "cram", "fasta", "fastq", "sam"] } time = { version = "0.3", features = ["local-offset"] } flate2 = "1.0" bstr = { version = "1.9", features = ["serde"] }