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Running pacbio isoseq GTF to get a swan graph to plot the transcripts

Status: Open.

#34 In mortazavilab/swan_vis;

· nmfad opened on Aug 27, 2025

Plotting Issue

Status: Open.

#33 In mortazavilab/swan_vis;

· Garfieldisthebest opened on Apr 11, 2025

Speeding up Exon skipping and intron retention on HPC

Status: Open.

#30 In mortazavilab/swan_vis;

· rugilemat opened on Apr 11, 2024

Switch diffexp to pydeseq2 for differential gene and transcript expression testing

Status: Open.

#24 In mortazavilab/swan_vis;

· fairliereese opened on May 15, 2023

find_es_genes returns duplicated entries

bugSomething isn't workingSomething isn't working

Status: Open.

#21 In mortazavilab/swan_vis;

· fairliereese opened on Jun 6, 2022

Differential isoform usage multiple conditions

Status: Open.

#20 In mortazavilab/swan_vis;

· rsalz opened on Apr 4, 2022

cannot load swan into python using recommended installation method

Status: Open.

#3 In mortazavilab/swan_vis;

· smorabit opened on Jun 14, 2020