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environment_snakemake.yaml
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environment_snakemake.yaml
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name: snakemake
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aioeasywebdav=2.4.0=py38h578d9bd_1001
- aiohttp=3.8.5=py38h01eb140_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- bcrypt=4.0.1=py38h0cc4f7c_1
- boto3=1.28.57=pyhd8ed1ab_0
- botocore=1.31.57=pyhd8ed1ab_0
- brotli-python=1.1.0=py38h17151c0_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cachetools=5.3.1=pyhd8ed1ab_0
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.16.0=py38h6d47a40_0
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=41.0.4=py38hcdda232_0
- datrie=0.8.2=py38h01eb140_7
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.20.1=py38h578d9bd_2
- dpath=2.1.6=pyha770c72_0
- dropbox=11.36.2=pyhd8ed1ab_0
- eido=0.2.1=pyhd8ed1ab_0
- exceptiongroup=1.1.3=pyhd8ed1ab_0
- filechunkio=1.8=py_2
- frozenlist=1.4.0=py38h01eb140_1
- ftputil=5.0.4=pyhd8ed1ab_0
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.37=pyhd8ed1ab_0
- google-api-core=2.12.0=pyhd8ed1ab_0
- google-api-python-client=2.101.0=pyhd8ed1ab_0
- google-auth=2.23.2=pyhca7485f_0
- google-auth-httplib2=0.1.1=pyhd8ed1ab_0
- google-cloud-core=2.3.3=pyhd8ed1ab_0
- google-cloud-storage=2.11.0=pyh1a96a4e_0
- google-crc32c=1.1.2=py38hf9d55a7_5
- google-resumable-media=2.6.0=pyhd8ed1ab_0
- googleapis-common-protos=1.60.0=pyhd8ed1ab_0
- grpcio=1.58.1=py38h94a1851_0
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=py38h578d9bd_4
- idna=3.4=pyhd8ed1ab_0
- importlib_resources=6.1.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- jsonschema=4.19.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.7.1=pyhd8ed1ab_0
- jupyter_core=5.3.2=py38h578d9bd_0
- ld_impl_linux-64=2.40=h41732ed_0
- libabseil=20230802.1=cxx17_h59595ed_0
- libblas=3.9.0=18_linux64_openblas
- libcblas=3.9.0=18_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_2
- libgfortran-ng=13.2.0=h69a702a_2
- libgfortran5=13.2.0=ha4646dd_2
- libgomp=13.2.0=h807b86a_2
- libgrpc=1.58.1=h30d5116_0
- liblapack=3.9.0=18_linux64_openblas
- liblapacke=3.9.0=18_linux64_openblas
- libnsl=2.0.0=hd590300_1
- libopenblas=0.3.24=pthreads_h413a1c8_0
- libprotobuf=4.24.3=hf27288f_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.43.0=h2797004_0
- libstdcxx-ng=13.2.0=h7e041cc_2
- libuuid=2.38.1=h0b41bf4_0
- libzlib=1.2.13=hd590300_5
- logmuse=0.2.6=pyh8c360ce_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.3=py38h01eb140_1
- mdurl=0.1.0=pyhd8ed1ab_0
- multidict=6.0.4=py38h1de0b5d_0
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=hcb278e6_0
- numpy=1.24.4=py38h59b608b_0
- oauth2client=4.1.3=py_0
- openssl=3.1.3=hd590300_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.3=py38h01efb38_1
- paramiko=3.3.1=pyhd8ed1ab_0
- peppy=0.35.7=pyhd8ed1ab_0
- pip=23.2.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.0=pyhd8ed1ab_0
- platformdirs=3.10.0=pyhd8ed1ab_0
- pluggy=1.3.0=pyhd8ed1ab_0
- ply=3.11=py_1
- prettytable=3.9.0=pyhd8ed1ab_0
- protobuf=4.24.3=py38hf14ab21_0
- psutil=5.9.5=py38h01eb140_1
- pulp=2.7.0=py38h578d9bd_1
- pyasn1=0.5.0=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.16.1=pyhd8ed1ab_0
- pynacl=1.5.0=py38h01eb140_3
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.4.2=pyhd8ed1ab_0
- python=3.8.17=he550d4f_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.18.0=pyhd8ed1ab_0
- python-irodsclient=1.1.8=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.8=4_cp38
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0.1=py38h01eb140_1
- re2=2023.03.02=h8c504da_0
- readline=8.2=h8228510_1
- referencing=0.30.2=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.5.3=pyhd8ed1ab_0
- rpds-py=0.10.3=py38h0cc4f7c_1
- rsa=4.9=pyhd8ed1ab_0
- s3transfer=0.7.0=pyhd8ed1ab_0
- setuptools=68.2.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.4.0=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=7.32.4=hdfd78af_0
- snakemake-minimal=7.32.4=pyhdfd78af_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.13=h2797004_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- traitlets=5.10.1=pyhd8ed1ab_0
- typing-extensions=4.8.0=hd8ed1ab_0
- typing_extensions=4.8.0=pyha770c72_0
- ubiquerg=0.6.3=pyhd8ed1ab_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.16=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.7=pyhd8ed1ab_0
- wheel=0.41.2=pyhd8ed1ab_0
- wrapt=1.15.0=py38h01eb140_1
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.2=py38h01eb140_0
- yte=1.5.1=pyha770c72_2
- zipp=3.17.0=pyhd8ed1ab_0
- pip:
- anndata==0.9.2
- annoy==1.17.3
- contourpy==1.1.1
- cycler==0.12.0
- cython==3.0.3
- fonttools==4.43.0
- h5py==3.9.0
- imageio==2.31.5
- importlib-metadata==6.8.0
- joblib==1.3.2
- kiwisolver==1.4.5
- lazy-loader==0.3
- llvmlite==0.41.0
- matplotlib==3.7.3
- natsort==8.4.0
- networkx==3.1
- numba==0.58.0
- patsy==0.5.3
- pillow==10.0.1
- pynndescent==0.5.10
- pywavelets==1.4.1
- scanpy==1.9.5
- scikit-image==0.21.0
- scikit-learn==1.3.1
- scipy==1.10.1
- scrublet==0.2.3
- seaborn==0.13.0
- session-info==1.0.0
- statsmodels==0.14.0
- stdlib-list==0.9.0
- tbb==2021.10.0
- threadpoolctl==3.2.0
- tifffile==2023.7.10
- tqdm==4.66.1
- umap-learn==0.5.4
prefix: /data/homezvol3/erebboah/miniconda3/envs/snakemake