diff --git a/docs/Sources/hpoa.md b/docs/Sources/hpoa.md
index 2a130237..bd484a47 100644
--- a/docs/Sources/hpoa.md
+++ b/docs/Sources/hpoa.md
@@ -83,7 +83,7 @@ __**Biolink captured**__
     * onset_qualifier (Onset.id)
     * frequency_qualifier (Note [3])
     * aggregating_knowledge_source (["infores:monarchinitiative"])
-    * primary_knowledge_source ("infores:hpoa")
+    * primary_knowledge_source ("infores:hpo-annotations")
 
 Notes:
 1. CURIE of [Evidence and Conclusion Ontology(https://bioportal.bioontology.org/ontologies/ECO)] term
diff --git a/poetry.lock b/poetry.lock
index 0a022854..a24bb315 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -97,33 +97,33 @@ prefixmaps = "*"
 
 [[package]]
 name = "black"
-version = "23.9.1"
+version = "23.7.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "black-23.7.0.tar.gz", hash = "sha256:022a582720b0d9480ed82576c920a8c1dde97cc38ff11d8d8859b3bd6ca9eedb"},
 ]
 
 [package.dependencies]
@@ -133,7 +133,6 @@ packaging = ">=22.0"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
 tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
@@ -143,13 +142,13 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "bmt"
-version = "1.1.2"
+version = "1.1.1"
 description = "Biolink Model Toolkit: A Python API for working with the Biolink Model"
 optional = false
 python-versions = ">=3.9,<4.0"
 files = [
-    {file = "bmt-1.1.2-py3-none-any.whl", hash = "sha256:16c2a1b5dafe585d93540189e97b0687a1c41ad936856033818ab174749ef30d"},
-    {file = "bmt-1.1.2.tar.gz", hash = "sha256:51a80ab5035cf8ebe11ab130cff6171e2d745c6a6a4752de633be76b5f12aad6"},
+    {file = "bmt-1.1.1-py3-none-any.whl", hash = "sha256:4edba07ba682cc1ed897fded7729f51283df25102601b5c7f1dc02254cf24e5e"},
+    {file = "bmt-1.1.1.tar.gz", hash = "sha256:36d8c261b11bde17c966be198448f8ad0fd102d7f460f1e26101beabc8245472"},
 ]
 
 [package.dependencies]
@@ -159,17 +158,17 @@ stringcase = ">=1.2.0,<2.0.0"
 
 [[package]]
 name = "boto3"
-version = "1.28.54"
+version = "1.28.36"
 description = "The AWS SDK for Python"
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "boto3-1.28.54-py3-none-any.whl", hash = "sha256:3cb2aee317a1b8686e3b23674e4099b8ff7451bd8acc61b9719acff86fa024d1"},
-    {file = "boto3-1.28.54.tar.gz", hash = "sha256:22e37d8c4f2d97b5e5c6ccc1d9edc7760717990b0ba8b8ea17a58cc87e57c5c9"},
+    {file = "boto3-1.28.36-py3-none-any.whl", hash = "sha256:c73614987b50b7984f96b10795a0a6bb76adbe3faf2e9d0f237a6ccef441a85a"},
+    {file = "boto3-1.28.36.tar.gz", hash = "sha256:09d25ad680b44b5d2be1de4050fd638b428d4afa669975138a324d9729c0cc72"},
 ]
 
 [package.dependencies]
-botocore = ">=1.31.54,<1.32.0"
+botocore = ">=1.31.36,<1.32.0"
 jmespath = ">=0.7.1,<2.0.0"
 s3transfer = ">=0.6.0,<0.7.0"
 
@@ -178,13 +177,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]
 
 [[package]]
 name = "botocore"
-version = "1.31.54"
+version = "1.31.36"
 description = "Low-level, data-driven core of boto 3."
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "botocore-1.31.54-py3-none-any.whl", hash = "sha256:71fdb337ddcdb6bf378e1211cba9ce754c35f12b1524c7d0c0c147b2310356c7"},
-    {file = "botocore-1.31.54.tar.gz", hash = "sha256:c98e78a9490c4166b205f87912b46770e156bfe7d53bae54ccbd49c68a336ec6"},
+    {file = "botocore-1.31.36-py3-none-any.whl", hash = "sha256:ba40b4e46bc48334cd4d2252b1b40c7733135c20366cfd69298b8f3e0beee001"},
+    {file = "botocore-1.31.36.tar.gz", hash = "sha256:df3ab6f41c6aad602dc52f82aef5326edc02aea93e132f8b9175e3ec589687c0"},
 ]
 
 [package.dependencies]
@@ -415,13 +414,13 @@ test = ["codacy-coverage", "coveralls", "dict_hash", "pytest", "pytest-cov", "ra
 
 [[package]]
 name = "curies"
-version = "0.6.4"
+version = "0.6.0"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "curies-0.6.4-py3-none-any.whl", hash = "sha256:d19e2f61d8a37560e96a5676a5f98cf056f4e2206e281bdcca74934e7623b9d8"},
-    {file = "curies-0.6.4.tar.gz", hash = "sha256:c896e6d8d7f469c9ce52f781c8c35d25c46619e977cc6c932f34d98bf33e3749"},
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+    {file = "curies-0.6.0.tar.gz", hash = "sha256:a31533ae9caeec332f9bb33e21366ab7ec32437c5f347fc9d85aa77cc48093cc"},
 ]
 
 [package.dependencies]
@@ -524,13 +523,13 @@ files = [
 
 [[package]]
 name = "elastic-transport"
-version = "8.4.1"
+version = "8.4.0"
 description = "Transport classes and utilities shared among Python Elastic client libraries"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "elastic-transport-8.4.1.tar.gz", hash = "sha256:e5548997113c5d9566c9a1a51ed67bce50a4871bc0e44b692166461279e4167e"},
-    {file = "elastic_transport-8.4.1-py3-none-any.whl", hash = "sha256:c718ce40e8217b6045604961463c10da69a152dda07af4e25b3feae8d7965fc0"},
+    {file = "elastic-transport-8.4.0.tar.gz", hash = "sha256:b9ad708ceb7fcdbc6b30a96f886609a109f042c0b9d9f2e44403b3133ba7ff10"},
+    {file = "elastic_transport-8.4.0-py3-none-any.whl", hash = "sha256:19db271ab79c9f70f8c43f8f5b5111408781a6176b54ab2e54d713b6d9ceb815"},
 ]
 
 [package.dependencies]
@@ -538,17 +537,17 @@ certifi = "*"
 urllib3 = ">=1.26.2,<2"
 
 [package.extras]
-develop = ["aiohttp", "furo", "mock", "pytest", "pytest-asyncio", "pytest-cov", "pytest-httpserver", "pytest-mock", "requests", "sphinx (>2)", "sphinx-autodoc-typehints", "trustme"]
+develop = ["aiohttp", "mock", "pytest", "pytest-asyncio", "pytest-cov", "pytest-httpserver", "pytest-mock", "requests", "trustme"]
 
 [[package]]
 name = "elasticsearch"
-version = "8.10.0"
+version = "8.9.0"
 description = "Python client for Elasticsearch"
 optional = false
 python-versions = ">=3.6, <4"
 files = [
-    {file = "elasticsearch-8.10.0-py3-none-any.whl", hash = "sha256:4a721a9ff9d669ed7140a043d5b84fb50eb7bda6aaf2eafb7bee49177dc316e8"},
-    {file = "elasticsearch-8.10.0.tar.gz", hash = "sha256:1a7f1b71dda0bc24c97d3e61c3b0d8165d5ab024f9f1538f35ed5894c6831ba2"},
+    {file = "elasticsearch-8.9.0-py3-none-any.whl", hash = "sha256:0795cbf0f61482070741c09ba02ac8fdf18f5984912fbd08b248fadd8a8c9952"},
+    {file = "elasticsearch-8.9.0.tar.gz", hash = "sha256:d3367fc013e04fc7aad349a6de9fad1ee04fb6d627b0e7896aa505c12fde5e04"},
 ]
 
 [package.dependencies]
@@ -585,19 +584,21 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "filelock"
-version = "3.12.4"
+version = "3.12.3"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "filelock-3.12.4-py3-none-any.whl", hash = "sha256:08c21d87ded6e2b9da6728c3dff51baf1dcecf973b768ef35bcbc3447edb9ad4"},
-    {file = "filelock-3.12.4.tar.gz", hash = "sha256:2e6f249f1f3654291606e046b09f1fd5eac39b360664c27f5aad072012f8bcbd"},
+    {file = "filelock-3.12.3-py3-none-any.whl", hash = "sha256:f067e40ccc40f2b48395a80fcbd4728262fab54e232e090a4063ab804179efeb"},
+    {file = "filelock-3.12.3.tar.gz", hash = "sha256:0ecc1dd2ec4672a10c8550a8182f1bd0c0a5088470ecd5a125e45f49472fac3d"},
 ]
 
+[package.dependencies]
+typing-extensions = {version = ">=4.7.1", markers = "python_version < \"3.11\""}
+
 [package.extras]
 docs = ["furo (>=2023.7.26)", "sphinx (>=7.1.2)", "sphinx-autodoc-typehints (>=1.24)"]
 testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-timeout (>=2.1)"]
-typing = ["typing-extensions (>=4.7.1)"]
 
 [[package]]
 name = "flake8"
@@ -645,13 +646,13 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 
 [[package]]
 name = "google-api-core"
-version = "2.12.0"
+version = "2.11.1"
 description = "Google API client core library"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-api-core-2.12.0.tar.gz", hash = "sha256:c22e01b1e3c4dcd90998494879612c38d0a3411d1f7b679eb89e2abe3ce1f553"},
-    {file = "google_api_core-2.12.0-py3-none-any.whl", hash = "sha256:ec6054f7d64ad13b41e43d96f735acbd763b0f3b695dabaa2d579673f6a6e160"},
+    {file = "google-api-core-2.11.1.tar.gz", hash = "sha256:25d29e05a0058ed5f19c61c0a78b1b53adea4d9364b464d014fbda941f6d1c9a"},
+    {file = "google_api_core-2.11.1-py3-none-any.whl", hash = "sha256:d92a5a92dc36dd4f4b9ee4e55528a90e432b059f93aee6ad857f9de8cc7ae94a"},
 ]
 
 [package.dependencies]
@@ -667,19 +668,20 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
 
 [[package]]
 name = "google-auth"
-version = "2.23.0"
+version = "2.22.0"
 description = "Google Authentication Library"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.6"
 files = [
-    {file = "google-auth-2.23.0.tar.gz", hash = "sha256:753a26312e6f1eaeec20bc6f2644a10926697da93446e1f8e24d6d32d45a922a"},
-    {file = "google_auth-2.23.0-py2.py3-none-any.whl", hash = "sha256:2cec41407bd1e207f5b802638e32bb837df968bb5c05f413d0fa526fac4cf7a7"},
+    {file = "google-auth-2.22.0.tar.gz", hash = "sha256:164cba9af4e6e4e40c3a4f90a1a6c12ee56f14c0b4868d1ca91b32826ab334ce"},
+    {file = "google_auth-2.22.0-py2.py3-none-any.whl", hash = "sha256:d61d1b40897407b574da67da1a833bdc10d5a11642566e506565d1b1a46ba873"},
 ]
 
 [package.dependencies]
 cachetools = ">=2.0.0,<6.0"
 pyasn1-modules = ">=0.2.1"
 rsa = ">=3.1.4,<5"
+six = ">=1.9.0"
 urllib3 = "<2.0"
 
 [package.extras]
@@ -709,20 +711,20 @@ grpc = ["grpcio (>=1.38.0,<2.0dev)"]
 
 [[package]]
 name = "google-cloud-storage"
-version = "2.11.0"
+version = "2.10.0"
 description = "Google Cloud Storage API client library"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "google-cloud-storage-2.11.0.tar.gz", hash = "sha256:6fbf62659b83c8f3a0a743af0d661d2046c97c3a5bfb587c4662c4bc68de3e31"},
-    {file = "google_cloud_storage-2.11.0-py2.py3-none-any.whl", hash = "sha256:88cbd7fb3d701c780c4272bc26952db99f25eb283fb4c2208423249f00b5fe53"},
+    {file = "google-cloud-storage-2.10.0.tar.gz", hash = "sha256:934b31ead5f3994e5360f9ff5750982c5b6b11604dc072bc452c25965e076dc7"},
+    {file = "google_cloud_storage-2.10.0-py2.py3-none-any.whl", hash = "sha256:9433cf28801671de1c80434238fb1e7e4a1ba3087470e90f70c928ea77c2b9d7"},
 ]
 
 [package.dependencies]
 google-api-core = ">=1.31.5,<2.0.dev0 || >2.3.0,<3.0.0dev"
 google-auth = ">=1.25.0,<3.0dev"
 google-cloud-core = ">=2.3.0,<3.0dev"
-google-resumable-media = ">=2.6.0"
+google-resumable-media = ">=2.3.2"
 requests = ">=2.18.0,<3.0.0dev"
 
 [package.extras]
@@ -810,20 +812,20 @@ testing = ["pytest"]
 
 [[package]]
 name = "google-resumable-media"
-version = "2.6.0"
+version = "2.5.0"
 description = "Utilities for Google Media Downloads and Resumable Uploads"
 optional = false
 python-versions = ">= 3.7"
 files = [
-    {file = "google-resumable-media-2.6.0.tar.gz", hash = "sha256:972852f6c65f933e15a4a210c2b96930763b47197cdf4aa5f5bea435efb626e7"},
-    {file = "google_resumable_media-2.6.0-py2.py3-none-any.whl", hash = "sha256:fc03d344381970f79eebb632a3c18bb1828593a2dc5572b5f90115ef7d11e81b"},
+    {file = "google-resumable-media-2.5.0.tar.gz", hash = "sha256:218931e8e2b2a73a58eb354a288e03a0fd5fb1c4583261ac6e4c078666468c93"},
+    {file = "google_resumable_media-2.5.0-py2.py3-none-any.whl", hash = "sha256:da1bd943e2e114a56d85d6848497ebf9be6a14d3db23e9fc57581e7c3e8170ec"},
 ]
 
 [package.dependencies]
 google-crc32c = ">=1.0,<2.0dev"
 
 [package.extras]
-aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "google-auth (>=1.22.0,<2.0dev)"]
+aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"]
 requests = ["requests (>=2.18.0,<3.0.0dev)"]
 
 [[package]]
@@ -1054,22 +1056,22 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.8.0"
+version = "4.13.0"
 description = "Read metadata from Python packages"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.7"
 files = [
-    {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"},
-    {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"},
+    {file = "importlib_metadata-4.13.0-py3-none-any.whl", hash = "sha256:8a8a81bcf996e74fee46f0d16bd3eaa382a7eb20fd82445c3ad11f4090334116"},
+    {file = "importlib_metadata-4.13.0.tar.gz", hash = "sha256:dd0173e8f150d6815e098fd354f6414b0f079af4644ddfe90c71e2fc6174346d"},
 ]
 
 [package.dependencies]
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]
 
 [[package]]
 name = "inflection"
@@ -1236,17 +1238,20 @@ jsonpointer = ">=1.9"
 
 [[package]]
 name = "jsonpath-ng"
-version = "1.6.0"
+version = "1.5.3"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
 optional = false
 python-versions = "*"
 files = [
-    {file = "jsonpath-ng-1.6.0.tar.gz", hash = "sha256:5483f8e9d74c39c9abfab554c070ae783c1c8cbadf5df60d561bc705ac68a07e"},
-    {file = "jsonpath_ng-1.6.0-py3-none-any.whl", hash = "sha256:6fd04833412c4b3d9299edf369542f5e67095ca84efa17cbb7f06a34958adc9f"},
+    {file = "jsonpath-ng-1.5.3.tar.gz", hash = "sha256:a273b182a82c1256daab86a313b937059261b5c5f8c4fa3fc38b882b344dd567"},
+    {file = "jsonpath_ng-1.5.3-py2-none-any.whl", hash = "sha256:f75b95dbecb8a0f3b86fd2ead21c2b022c3f5770957492b9b6196ecccfeb10aa"},
+    {file = "jsonpath_ng-1.5.3-py3-none-any.whl", hash = "sha256:292a93569d74029ba75ac2dc3d3630fc0e17b2df26119a165fa1d498ca47bf65"},
 ]
 
 [package.dependencies]
+decorator = "*"
 ply = "*"
+six = "*"
 
 [[package]]
 name = "jsonpointer"
@@ -1261,13 +1266,13 @@ files = [
 
 [[package]]
 name = "jsonschema"
-version = "4.19.1"
+version = "4.19.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.19.1-py3-none-any.whl", hash = "sha256:cd5f1f9ed9444e554b38ba003af06c0a8c2868131e56bfbef0550fb450c0330e"},
-    {file = "jsonschema-4.19.1.tar.gz", hash = "sha256:ec84cc37cfa703ef7cd4928db24f9cb31428a5d0fa77747b8b51a847458e0bbf"},
+    {file = "jsonschema-4.19.0-py3-none-any.whl", hash = "sha256:043dc26a3845ff09d20e4420d6012a9c91c9aa8999fa184e7efcfeccb41e32cb"},
+    {file = "jsonschema-4.19.0.tar.gz", hash = "sha256:6e1e7569ac13be8139b2dd2c21a55d350066ee3f80df06c608b398cdc6f30e8f"},
 ]
 
 [package.dependencies]
@@ -1463,13 +1468,13 @@ linkml-runtime = ">=1.1.6"
 
 [[package]]
 name = "linkml-runtime"
-version = "1.5.7"
+version = "1.5.6"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 optional = false
 python-versions = ">=3.7.6,<4.0.0"
 files = [
-    {file = "linkml_runtime-1.5.7-py3-none-any.whl", hash = "sha256:8ea32b5f0de3637c2339edfbb88008bb08a9e2ff36d1aada20e002058263418f"},
-    {file = "linkml_runtime-1.5.7.tar.gz", hash = "sha256:c202799f01571b0c202bb521957f281b1052fabad106419c8e1368802088d6a4"},
+    {file = "linkml_runtime-1.5.6-py3-none-any.whl", hash = "sha256:b869f7adf340b7df73f4fefa28a402de5719bbd7d172590e8a7ae9c25e179d77"},
+    {file = "linkml_runtime-1.5.6.tar.gz", hash = "sha256:eb5f506f7ec08c44e49578d0ecc80e2d3d922756c2430e06906ee9502cca1b4c"},
 ]
 
 [package.dependencies]
@@ -1531,13 +1536,13 @@ dev = ["mkdocs", "mkdocs-material", "mkdocstrings", "mkdocstrings-python-legacy"
 
 [[package]]
 name = "loguru"
-version = "0.7.2"
+version = "0.7.0"
 description = "Python logging made (stupidly) simple"
 optional = false
 python-versions = ">=3.5"
 files = [
-    {file = "loguru-0.7.2-py3-none-any.whl", hash = "sha256:003d71e3d3ed35f0f8984898359d65b79e5b21943f78af86aa5491210429b8eb"},
-    {file = "loguru-0.7.2.tar.gz", hash = "sha256:e671a53522515f34fd406340ee968cb9ecafbc4b36c679da03c18fd8d0bd51ac"},
+    {file = "loguru-0.7.0-py3-none-any.whl", hash = "sha256:b93aa30099fa6860d4727f1b81f8718e965bb96253fa190fab2077aaad6d15d3"},
+    {file = "loguru-0.7.0.tar.gz", hash = "sha256:1612053ced6ae84d7959dd7d5e431a0532642237ec21f7fd83ac73fe539e03e1"},
 ]
 
 [package.dependencies]
@@ -1545,7 +1550,7 @@ colorama = {version = ">=0.3.4", markers = "sys_platform == \"win32\""}
 win32-setctime = {version = ">=1.0.0", markers = "sys_platform == \"win32\""}
 
 [package.extras]
-dev = ["Sphinx (==7.2.5)", "colorama (==0.4.5)", "colorama (==0.4.6)", "exceptiongroup (==1.1.3)", "freezegun (==1.1.0)", "freezegun (==1.2.2)", "mypy (==v0.910)", "mypy (==v0.971)", "mypy (==v1.4.1)", "mypy (==v1.5.1)", "pre-commit (==3.4.0)", "pytest (==6.1.2)", "pytest (==7.4.0)", "pytest-cov (==2.12.1)", "pytest-cov (==4.1.0)", "pytest-mypy-plugins (==1.9.3)", "pytest-mypy-plugins (==3.0.0)", "sphinx-autobuild (==2021.3.14)", "sphinx-rtd-theme (==1.3.0)", "tox (==3.27.1)", "tox (==4.11.0)"]
+dev = ["Sphinx (==5.3.0)", "colorama (==0.4.5)", "colorama (==0.4.6)", "freezegun (==1.1.0)", "freezegun (==1.2.2)", "mypy (==v0.910)", "mypy (==v0.971)", "mypy (==v0.990)", "pre-commit (==3.2.1)", "pytest (==6.1.2)", "pytest (==7.2.1)", "pytest-cov (==2.12.1)", "pytest-cov (==4.0.0)", "pytest-mypy-plugins (==1.10.1)", "pytest-mypy-plugins (==1.9.3)", "sphinx-autobuild (==2021.3.14)", "sphinx-rtd-theme (==1.2.0)", "tox (==3.27.1)", "tox (==4.4.6)"]
 
 [[package]]
 name = "markdown"
@@ -1645,13 +1650,13 @@ files = [
 
 [[package]]
 name = "mkdocs"
-version = "1.5.3"
+version = "1.5.2"
 description = "Project documentation with Markdown."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "mkdocs-1.5.3-py3-none-any.whl", hash = "sha256:3b3a78e736b31158d64dbb2f8ba29bd46a379d0c6e324c2246c3bc3d2189cfc1"},
-    {file = "mkdocs-1.5.3.tar.gz", hash = "sha256:eb7c99214dcb945313ba30426c2451b735992c73c2e10838f76d09e39ff4d0e2"},
+    {file = "mkdocs-1.5.2-py3-none-any.whl", hash = "sha256:60a62538519c2e96fe8426654a67ee177350451616118a41596ae7c876bb7eac"},
+    {file = "mkdocs-1.5.2.tar.gz", hash = "sha256:70d0da09c26cff288852471be03c23f0f521fc15cf16ac89c7a3bfb9ae8d24f9"},
 ]
 
 [package.dependencies]
@@ -1695,13 +1700,13 @@ requests = ">=2.26"
 
 [[package]]
 name = "mkdocs-material-extensions"
-version = "1.2"
+version = "1.1.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "mkdocs_material_extensions-1.2-py3-none-any.whl", hash = "sha256:c767bd6d6305f6420a50f0b541b0c9966d52068839af97029be14443849fb8a1"},
-    {file = "mkdocs_material_extensions-1.2.tar.gz", hash = "sha256:27e2d1ed2d031426a6e10d5ea06989d67e90bb02acd588bc5673106b5ee5eedf"},
+    {file = "mkdocs_material_extensions-1.1.1-py3-none-any.whl", hash = "sha256:e41d9f38e4798b6617ad98ca8f7f1157b1e4385ac1459ca1e4ea219b556df945"},
+    {file = "mkdocs_material_extensions-1.1.1.tar.gz", hash = "sha256:9c003da71e2cc2493d910237448c672e00cefc800d3d6ae93d2fc69979e3bd93"},
 ]
 
 [[package]]
@@ -1812,43 +1817,36 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "numpy"
-version = "1.26.0"
+version = "1.25.2"
 description = "Fundamental package for array computing in Python"
 optional = false
-python-versions = "<3.13,>=3.9"
+python-versions = ">=3.9"
 files = [
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+    {file = "rpds_py-0.10.0.tar.gz", hash = "sha256:e36d7369363d2707d5f68950a64c4e025991eb0177db01ccb6aa6facae48b69f"},
 ]
 
 [[package]]
@@ -2993,13 +2972,13 @@ keepalive = ["keepalive (>=0.5)"]
 
 [[package]]
 name = "sphinx"
-version = "7.2.6"
+version = "7.2.4"
 description = "Python documentation generator"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "sphinx-7.2.6-py3-none-any.whl", hash = "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560"},
-    {file = "sphinx-7.2.6.tar.gz", hash = "sha256:9a5160e1ea90688d5963ba09a2dcd8bdd526620edbb65c328728f1b2228d5ab5"},
+    {file = "sphinx-7.2.4-py3-none-any.whl", hash = "sha256:9b3aa23254ffc5be468646810543e491653bf5a67f3f23e4ccd4e515b0bd0b9c"},
+    {file = "sphinx-7.2.4.tar.gz", hash = "sha256:1aeec862bf1edff4374012ac38082e0d1daa066c9e327841a846401164797988"},
 ]
 
 [package.dependencies]
@@ -3328,24 +3307,13 @@ typer = ">=0.4.0,<=0.7.0"
 
 [[package]]
 name = "typing-extensions"
-version = "4.8.0"
-description = "Backported and Experimental Type Hints for Python 3.8+"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
-    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
-]
-
-[[package]]
-name = "tzdata"
-version = "2023.3"
-description = "Provider of IANA time zone data"
+version = "4.7.1"
+description = "Backported and Experimental Type Hints for Python 3.7+"
 optional = false
-python-versions = ">=2"
+python-versions = ">=3.7"
 files = [
-    {file = "tzdata-2023.3-py2.py3-none-any.whl", hash = "sha256:7e65763eef3120314099b6939b5546db7adce1e7d6f2e179e3df563c70511eda"},
-    {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"},
+    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
+    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
 ]
 
 [[package]]
@@ -3396,13 +3364,13 @@ test = ["flake8 (>=2.4.0)", "isort (>=4.2.2)", "pytest (>=2.2.3)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.24.5"
+version = "20.24.3"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"},
-    {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"},
+    {file = "virtualenv-20.24.3-py3-none-any.whl", hash = "sha256:95a6e9398b4967fbcb5fef2acec5efaf9aa4972049d9ae41f95e0972a683fd02"},
+    {file = "virtualenv-20.24.3.tar.gz", hash = "sha256:e5c3b4ce817b0b328af041506a2a299418c98747c4b1e68cb7527e74ced23efc"},
 ]
 
 [package.dependencies]
@@ -3411,7 +3379,7 @@ filelock = ">=3.12.2,<4"
 platformdirs = ">=3.9.1,<4"
 
 [package.extras]
-docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
 test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
 [[package]]
@@ -3470,13 +3438,13 @@ tests = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "websocket-client"
-version = "1.6.3"
+version = "1.6.2"
 description = "WebSocket client for Python with low level API options"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "websocket-client-1.6.3.tar.gz", hash = "sha256:3aad25d31284266bcfcfd1fd8a743f63282305a364b8d0948a43bd606acc652f"},
-    {file = "websocket_client-1.6.3-py3-none-any.whl", hash = "sha256:6cfc30d051ebabb73a5fa246efdcc14c8fbebbd0330f8984ac3bb6d9edd2ad03"},
+    {file = "websocket-client-1.6.2.tar.gz", hash = "sha256:53e95c826bf800c4c465f50093a8c4ff091c7327023b10bfaff40cf1ef170eaa"},
+    {file = "websocket_client-1.6.2-py3-none-any.whl", hash = "sha256:ce54f419dfae71f4bdba69ebe65bf7f0a93fe71bc009ad3a010aacc3eebad537"},
 ]
 
 [package.extras]
@@ -3584,17 +3552,17 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.17.0"
+version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
-    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
+    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
diff --git a/scripts/add_association_copyfields.sh b/scripts/add_association_copyfields.sh
index 7b9cf729..596ea92b 100755
--- a/scripts/add_association_copyfields.sh
+++ b/scripts/add_association_copyfields.sh
@@ -36,7 +36,7 @@ curl -X POST -H 'Content-type:application/json' --data-binary '{
 
 # now add copyfields declarations for subject_label, subject_closure_label, object_label, object_closure_label
 
-for field in subject_label subject_closure_label subject_taxon subject_taxon_label predicate object_label object_closure_label object_taxon object_taxon_label primary_knowledge_source in_taxon_label qualifier_label onset_qualifier_label frequency_qualifier_label sex_qualifier_label
+for field in subject_label subject_closure_label subject_taxon subject_taxon_label predicate object_label object_closure_label object_taxon object_taxon_label primary_knowledge_source qualifier_label onset_qualifier_label frequency_qualifier_label sex_qualifier_label
 do
   curl -X POST -H 'Content-type:application/json' --data-binary "{
   \"add-copy-field\": {
diff --git a/scripts/after_download.sh b/scripts/after_download.sh
index ec65fd0e..66c35194 100755
--- a/scripts/after_download.sh
+++ b/scripts/after_download.sh
@@ -13,3 +13,6 @@ awk '{ if ($2 == "rdfs:subClassOf" || $2 == "BFO:0000050" || $2 == "UPHENO:00000
 
 # Extract NCBITaxon node names into their own basic tsv for gene ingests
 tar xfO data/monarch/kg-phenio.tar.gz merged-kg_nodes.tsv | grep ^NCBITaxon | cut -f 1,3 > data/monarch/taxon_labels.tsv
+
+# Repair Orphanet prefixes in MONDO sssom rows as necessary
+sed -i 's/\torphanet.ordo\:/\tOrphanet\:/g' data/monarch/mondo.sssom.tsv
diff --git a/scripts/load_sqlite.sh b/scripts/load_sqlite.sh
index cf87e2f1..d427dfb0 100755
--- a/scripts/load_sqlite.sh
+++ b/scripts/load_sqlite.sh
@@ -30,5 +30,11 @@ rm output/monarch-kg_*.tsv
 gzip --force output/qc/monarch-kg-dangling-edges.tsv
 gzip --force output/monarch-kg-denormalized-edges.tsv
 
-echo "Compressing database"
+echo "Populate phenio db term_association..."
+cp data/monarch/phenio.db.gz output/phenio.db.gz
+gunzip output/phenio.db.gz
+sqlite3 -cmd "attach 'monarch-kg.db' as monarch" phenio.db "insert into term_association (id, subject, predicate, object, evidence_type, publication, source) select id, subject, predicate, object, has_evidence as evidence_type, publications as publication, primary_knowledge_source as source from monarch.edges where predicate = 'biolink:has_phenotype' and negated <> 'True'"
+
+echo "Compressing databases"
+gzip --force output/phenio.db
 gzip --force output/monarch-kg.db
diff --git a/src/monarch_ingest/download.yaml b/src/monarch_ingest/download.yaml
index 0241e41e..5648848b 100644
--- a/src/monarch_ingest/download.yaml
+++ b/src/monarch_ingest/download.yaml
@@ -306,6 +306,10 @@
   url: https://github.com/monarch-initiative/phenio/releases/latest/download/phenio-relation-graph.tar.gz
   local_name: data/monarch/phenio-relation-graph.tar.gz
   tag: phenio
+-
+  url: https://s3.amazonaws.com/bbop-sqlite/phenio.db.gz
+  local_name: data/monarch/phenio.db.gz
+  tag: phenio
 
 # -
 #   url: https://ci.monarchinitiative.org/job/monarch-ontology-json-sri/lastSuccessfulBuild/artifact/build/monarch-ontology-final.json
diff --git a/src/monarch_ingest/ingests/panther/orthology_utils.py b/src/monarch_ingest/ingests/panther/orthology_utils.py
index 76426dfd..e78818da 100644
--- a/src/monarch_ingest/ingests/panther/orthology_utils.py
+++ b/src/monarch_ingest/ingests/panther/orthology_utils.py
@@ -50,7 +50,7 @@ def ncbitaxon_by_name(species_tag: str) -> Optional[str]:
     "FlyBase": "FB",
     "Ensembl": "ENSEMBL",
     "EnsemblGenome": "ENSEMBL",  # TODO: review and fix this later?
-    "PomBase": "POMBASE",
+    "PomBase": "PomBase",
     "WormBase": "WB",  # Wormbase supports 'WormBase:' but alliancegenome.org and identifiers.org supports 'WB:'
     "GeneID": "NCBIGene",          # seems to be Entrez Gene ID => map onto the NCBIGene: namespace
     "Gene": None,                  # seems to be the gene symbol - we ignore it for now?
diff --git a/tests/unit/panther/test_genome_orthologs.py b/tests/unit/panther/test_genome_orthologs.py
index f675f9aa..cebf0cd6 100644
--- a/tests/unit/panther/test_genome_orthologs.py
+++ b/tests/unit/panther/test_genome_orthologs.py
@@ -49,7 +49,7 @@ def script():
         "RO:HOM0000017",
         "PANTHER.FAMILY:PTHR12434",
     ],
-    "POMBASE:SPAC20G8.06": [
+    "PomBase:SPAC20G8.06": [
         "ZFIN:ZDB-GENE-040915-1",
         "NCBITaxon:7955",
         "NCBITaxon:4896",