From 150f9337b431bb1c1ad35f11ed5056d6a9de6e87 Mon Sep 17 00:00:00 2001 From: Kevin Schaper Date: Tue, 19 Sep 2023 08:48:20 -0700 Subject: [PATCH] Update pombase curie prefix in ingest & tests --- src/monarch_ingest/ingests/panther/orthology_utils.py | 2 +- tests/unit/panther/test_genome_orthologs.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/monarch_ingest/ingests/panther/orthology_utils.py b/src/monarch_ingest/ingests/panther/orthology_utils.py index 76426dfd..e78818da 100644 --- a/src/monarch_ingest/ingests/panther/orthology_utils.py +++ b/src/monarch_ingest/ingests/panther/orthology_utils.py @@ -50,7 +50,7 @@ def ncbitaxon_by_name(species_tag: str) -> Optional[str]: "FlyBase": "FB", "Ensembl": "ENSEMBL", "EnsemblGenome": "ENSEMBL", # TODO: review and fix this later? - "PomBase": "POMBASE", + "PomBase": "PomBase", "WormBase": "WB", # Wormbase supports 'WormBase:' but alliancegenome.org and identifiers.org supports 'WB:' "GeneID": "NCBIGene", # seems to be Entrez Gene ID => map onto the NCBIGene: namespace "Gene": None, # seems to be the gene symbol - we ignore it for now? diff --git a/tests/unit/panther/test_genome_orthologs.py b/tests/unit/panther/test_genome_orthologs.py index f675f9aa..cebf0cd6 100644 --- a/tests/unit/panther/test_genome_orthologs.py +++ b/tests/unit/panther/test_genome_orthologs.py @@ -49,7 +49,7 @@ def script(): "RO:HOM0000017", "PANTHER.FAMILY:PTHR12434", ], - "POMBASE:SPAC20G8.06": [ + "PomBase:SPAC20G8.06": [ "ZFIN:ZDB-GENE-040915-1", "NCBITaxon:7955", "NCBITaxon:4896",