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Genotype Harmonizer Download
The Genotype Harmonizer releases can be downloaded here. On the bottom of the page there is also a link to the latest snap-shot version. Usage information can be found [here](Genotype Harmonizer)
Added MACH R2 Measure to filter the input data.
Some very minor improvements
New much faster VCF reader, fixed bug combining sample filter and MAF filter, improved logging of excluded and swapped SNPs
Added support for reading and writing TriTyper data. Added variant and sample filters for input data.
Fixed minor bug causing vcf.gz files not to be automatically recognized as a VCF file
Added support for reading and writing oxford gen data.
The last automatic build based on the current code-base can be downloaded here: http://www.molgenis.org/jenkins/job/systemsgenetics/nl.systemsgenetics$Genotype-Harmonizer/lastBuild/
- QTL mapping pipeline
- Genotype Harmonizer
- Genotype IO
- ASE
- GADO Command line
- Downstreamer
- GeneNetwork Analysis
Analysis plans
Other