DESCRIPTION

Package: SeuratDisk
Type: Package
Title: Interfaces for HDF5-Based Single Cell File Formats
Version: 0.0.0.9021
Date: 2023-03-16
Authors@R: c(
  person(given = 'Paul', family = 'Hoffman', email = 'phoffman@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9448-8833'))
  )
Description: The h5Seurat file format is specifically designed for the storage
  and analysis of multi-modal single-cell and spatially-resolved expression
  experiments, for example, from CITE-seq or 10X Visium technologies. It holds
  all molecular information and associated metadata, including (for example)
  nearest-neighbor graphs, dimensional reduction information, spatial
  coordinates and image data, and cluster labels. We also support rapid and
  on-disk conversion between h5Seurat and AnnData objects, with the goal of
  enhancing interoperability between Seurat and Scanpy.
URL: https://mojaveazure.github.io/seurat-disk/, https://github.com/mojaveazure/seurat-disk
BugReports: https://github.com/mojaveazure/seurat-disk/issues
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Remotes: satijalab/seurat-data
Depends:
  R (>= 3.6.0)
Imports:
  cli (>= 2.0.1),
  crayon (>= 1.3.4),
  hdf5r (>= 1.3.0),
  Matrix (>= 1.2.18),
  methods (>= 3.6.0),
  R6 (>= 2.4.1),
  rlang (>= 0.4.4),
  Seurat (>= 3.2.0),
  SeuratObject (>= 4.0.0),
  stats,
  stringi (>= 1.4.6),
  tools,
  utils,
  withr (>= 2.1.2)
Collate:
    'zzz.R'
    'GetObject.R'
    'AssembleObject.R'
    'AppendData.R'
    'TestObject.R'
    'TestH5.R'
    'h5info.R'
    'scdisk.R'
    'h5Seurat.R'
    'Connect.R'
    'PadMatrix.R'
    'sparse_matrix.R'
    'Transpose.R'
    'Convert.R'
    'LoadH5Seurat.R'
    'loom.R'
    'loom_bindings.R'
    'LoadLoom.R'
    'ReadH5.R'
    'WriteH5Group.R'
    'SaveH5Seurat.R'
    'SaveLoom.R'
    'h5Seurat_bindings.R'
Suggests:
    httr,
    knitr,
    rmarkdown,
    SeuratData
VignetteBuilder: knitr