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API Reference

.. currentmodule:: afqinsight

Datasets

This class encapsulates an AFQ dataset and has static methods to read data from csv files conforming to the AFQ data standard.

.. autoclass:: AFQDataset

Pipelines

These are AFQ-Insights recommended estimator pipelines.

.. autofunction:: make_afq_regressor_pipeline

.. autofunction:: make_afq_classifier_pipeline

Transformers

These transformers transform tractometry information from the AFQ standard data format to feature matrices that are ready for ingestion into sklearn-compatible pipelines.

.. autoclass:: AFQDataFrameMapper

Cross Validation

This function validates model performance using cross-validation, while checkpointing the estimators and scores.

.. autofunction:: cross_validate_checkpoint