forked from campbio/celda
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathNAMESPACE
executable file
·93 lines (92 loc) · 2.31 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
# Generated by roxygen2: do not edit by hand
export(DecontX)
export(appendCeldaList)
export(available_models)
export(bestLogLikelihood)
export(celda)
export(celdaGridSearch)
export(celdaHeatmap)
export(celdaPerplexity)
export(celdaProbabilityMap)
export(celdaTsne)
export(celdaUmap)
export(celda_C)
export(celda_CG)
export(celda_G)
export(clusterProbability)
export(clusters)
export(compareCountMatrix)
export(differentialExpression)
export(distinct_colors)
export(factorizeMatrix)
export(featureModuleLookup)
export(featureModuleTable)
export(logLikelihood)
export(logLikelihood.celda_C)
export(logLikelihood.celda_CG)
export(logLikelihood.celda_G)
export(logLikelihoodHistory)
export(matrixNames)
export(moduleHeatmap)
export(normalizeCounts)
export(params)
export(perplexity)
export(plotDimReduceCluster)
export(plotDimReduceFeature)
export(plotDimReduceGrid)
export(plotDimReduceModule)
export(plotGridSearchPerplexity)
export(plotGridSearchPerplexity.celda_C)
export(plotGridSearchPerplexity.celda_CG)
export(plotGridSearchPerplexity.celda_G)
export(plotHeatmap)
export(recodeClusterY)
export(recodeClusterZ)
export(recursiveSplitCell)
export(recursiveSplitModule)
export(resList)
export(resamplePerplexity)
export(runParams)
export(sampleLabel)
export(selectBestModel)
export(semi_pheatmap)
export(simulateCells)
export(simulateCells.celda_C)
export(simulateCells.celda_CG)
export(simulateCells.celda_G)
export(simulateObservedMatrix)
export(subsetCeldaList)
export(topRank)
export(violinPlot)
exportMethods(bestLogLikelihood)
exportMethods(celdaHeatmap)
exportMethods(celdaPerplexity)
exportMethods(celdaProbabilityMap)
exportMethods(celdaTsne)
exportMethods(celdaUmap)
exportMethods(clusterProbability)
exportMethods(clusters)
exportMethods(factorizeMatrix)
exportMethods(featureModuleLookup)
exportMethods(logLikelihoodHistory)
exportMethods(matrixNames)
exportMethods(params)
exportMethods(perplexity)
exportMethods(resList)
exportMethods(runParams)
exportMethods(sampleLabel)
import(RColorBrewer)
import(data.table)
import(foreach)
import(grDevices)
import(graphics)
import(grid)
import(gtable)
import(plyr)
import(scales)
useDynLib(celda,"_colSumByGroup")
useDynLib(celda,"_colSumByGroupChange")
useDynLib(celda,"_colSumByGroup_numeric")
useDynLib(celda,"_rowSumByGroup")
useDynLib(celda,"_rowSumByGroupChange")
useDynLib(celda,"_rowSumByGroup_numeric")