Jupyter Notebook does not execute !python or %run in the selected conda environment.

[spdavern]

Environment data

• VS Code version: 1.53.0
• Extension version (available under the Extensions sidebar): v2021.1.502429796
• OS and version: macOS 10.15.7
• Python version (& distribution if applicable, e.g. Anaconda): 3.7.9
• Type of virtual environment used (N/A | venv | virtualenv | conda | ...): conda
• Relevant/affected Python packages and their versions: XXX
• Relevant/affected Python-related VS Code extensions and their versions: XXX
• Value of the python.languageServer setting: Jedi

[NOTE: If you suspect that your issue is related to the Microsoft Python Language Server (python.languageServer: 'Microsoft'), please download our new language server Pylance from the VS Code marketplace to see if that fixes your issue]

Expected behaviour

Python script run using !python or %run within a cell in a jupyter notebook uses the same environment as the jupyter notebook

Actual behaviour

Python script uses base conda environment rather than the selected conda environment

Steps to reproduce:

[NOTE: Self-contained, minimal reproducing code samples are extremely helpful and will expedite addressing your issue]

1. Open Jupyter notebook in VS Code. Select a kernel with a Conda environment with a package that isn't in the base env.
2. Run a .py script using ! python .py or %run .py that imports a package in the selected conda environment.

Logs

Output for Python in the Output panel (View→Output, change the drop-down the upper-right of the Output panel to Python)

XXX

[spdavern]

To address the issues I deleted VS Code by opening my Mac Applications folder, right clicking on VS Code, selecting Move to Trash. I then downloaded VS Code 1.52.1 from here, unzipped the download, dragged VS Code back to my Applications folder. Opened VS Code and the Jupyter Notebook displayed above, re-ran the cells and NO ERROR! Conclusion: there is an issue with 1.53.0!

So, reverting from 1.53.0 back to 1.52.1 got me back to work but it doesn't fix the 1.53.0 issue.

[claudiaregio]

Thanks @spdavern! Will take a look as soon as possible

[DonJayamanne]

@spdavern I'm sorry for not getting back to you on this issue.

• Please could you ensure you have the
  • latest Jupyter extension installed
  • latest VS Code installed
• Please could you enable logging as follows:
  • Open settings & go into Jupyter->Logging
  • Change the value to debug
  • Reload VS Code,
• Attempt to repro the issue & then copy the output from the Jupyter output panel.

[DonJayamanne]

Closing this issue due to inactivity