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lines changed Original file line number Diff line number Diff line change @@ -2324,10 +2324,24 @@ int git_config_get_virtualfilesystem(void)
23242324 if (core_virtualfilesystem && !* core_virtualfilesystem )
23252325 core_virtualfilesystem = NULL ;
23262326
2327- /* virtual file system relies on the sparse checkout logic so force it on */
23282327 if (core_virtualfilesystem ) {
2329- core_apply_sparse_checkout = 1 ;
2330- return 1 ;
2328+ /*
2329+ * Some git commands spawn helpers and redirect the index to a different
2330+ * location. These include "difftool -d" and the sequencer
2331+ * (i.e. `git rebase -i`, `git cherry-pick` and `git revert`) and others.
2332+ * In those instances we don't want to update their temporary index with
2333+ * our virtualization data.
2334+ */
2335+ char * default_index_file = xstrfmt ("%s/%s" , the_repository -> gitdir , "index" );
2336+ int should_run_hook = !strcmp (default_index_file , the_repository -> index_file );
2337+
2338+ free (default_index_file );
2339+ if (should_run_hook ) {
2340+ /* virtual file system relies on the sparse checkout logic so force it on */
2341+ core_apply_sparse_checkout = 1 ;
2342+ return 1 ;
2343+ }
2344+ core_virtualfilesystem = NULL ;
23312345 }
23322346
23332347 return 0 ;
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