diff --git a/wdl/metaMS_gcms.wdl b/wdl/metaMS_gcms.wdl index 2c812f9..9836839 100644 --- a/wdl/metaMS_gcms.wdl +++ b/wdl/metaMS_gcms.wdl @@ -40,6 +40,26 @@ task runMetaMSGCMS { File output_metafile = "${output_directory}/${output_filename}.json" } + runtime { + docker: "microbiomedata/metams:2.2.2" + } +} + +workflow lcmsLipidomics{ + call runLipidomicsMetaMS + +} + +task lcmsLipidomics{ + input { + File lipid_workflow_toml_path + } + + command { + metaMS run-lipidomics-workflow \ + ${lipid_workflow_toml_path} + } + runtime { docker: "microbiomedata/metams:2.2.2" }