Postdoc focused on microbial genomics. Bridging the gap between biologists and computer scientists.
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Houston Methodist Research Institute
- Houston, TX, USA
- microbemarsh.github.io
- @microbemarsh
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The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
SquiggleKit: A toolkit for manipulating nanopore signal data
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
Port of OpenAI's Whisper model in C/C++
Signal based nanopore RNA demultiplexing with convolutional neural networks
CLI tool for flexible and fast adaptive sampling on ONT sequencers