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@mhammell-laboratory

MGHammell Laboratory

The Gale Hammell Lab uses algorithms to integrate high throughput sequencing data to model regulatory re-wiring events in human diseases.

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  1. TEtranscripts TEtranscripts Public

    A package for including transposable elements in differential enrichment analysis of sequencing datasets.

    Python 227 30

  2. TEsmall TEsmall Public

    A pipeline for profiling TE-derived small RNAs

    Python 6 5

  3. TElocal TElocal Public

    A package for quantifying transposable elements at a locus level for RNAseq datasets.

    Python 24 8

Repositories

Showing 9 of 9 repositories
  • DANCer Public

    Code for (sc)DANCer

    mhammell-laboratory/DANCer’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • TEtranscripts Public

    A package for including transposable elements in differential enrichment analysis of sequencing datasets.

    mhammell-laboratory/TEtranscripts’s past year of commit activity
    Python 227 GPL-3.0 30 4 0 Updated Oct 24, 2024
  • ASAP_CRN_data_analysis_scripts Public

    Scripts used in data analysis for ASAP CRN projects

    mhammell-laboratory/ASAP_CRN_data_analysis_scripts’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Aug 28, 2024
  • TElocal Public

    A package for quantifying transposable elements at a locus level for RNAseq datasets.

    mhammell-laboratory/TElocal’s past year of commit activity
    Python 24 GPL-3.0 8 17 0 Updated Aug 23, 2024
  • CellRangerTE Public

    Script to create a Cell Ranger reference database that can quantify transposable elements.

    mhammell-laboratory/CellRangerTE’s past year of commit activity
    Shell 2 GPL-3.0 0 1 0 Updated Aug 23, 2024
  • TEsmall Public

    A pipeline for profiling TE-derived small RNAs

    mhammell-laboratory/TEsmall’s past year of commit activity
    Python 6 GPL-3.0 5 4 0 Updated Jul 16, 2024
  • TEpeaks Public

    Package for including repetitive regions in peak calling from ChIP-seq datasets

    mhammell-laboratory/TEpeaks’s past year of commit activity
    C 8 GPL-3.0 4 5 (1 issue needs help) 0 Updated Aug 14, 2023
  • tetoolkit-test-data Public

    Github ultra compressed version of data needed by TEtranscripts

    mhammell-laboratory/tetoolkit-test-data’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 4, 2019
  • ezBAMQC Public

    NGS data alignment file QC Package

    mhammell-laboratory/ezBAMQC’s past year of commit activity
    C 7 0 3 0 Updated Jun 2, 2016

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