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Commits on Mar 9, 2024

• Cleanup some more code

  aarmey

  committed
  2aa19a3

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Commits on Mar 7, 2024

• Cleanup inport a bit

  aarmey

  committed
  cbc5ba1

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Commits on Mar 6, 2024

• Move state handling to the lineage (#993)

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  aarmey

  authored
  39929b4

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• Bring back numba handling the M step (#997)

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  aarmey

  authored
  9f37cb0

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Commits on Mar 4, 2024

• Merge some of the gamma distribution fitting (#994)

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  aarmey

  authored
  9418293

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• Simpler MCF10A handling (#996)

  aarmey

  authored
  ca8216b

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Commits on Mar 3, 2024

• Fix the MCF10A import (#995)

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  aarmey

  authored
  00e147d

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Commits on Mar 2, 2024

• Clear isRootCell, since cells are in generation order

  aarmey

  committed
  b5da373

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• Faster estimator without numba (#992)

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  aarmey

  authored
  0dc6595

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Commits on Feb 24, 2024

• Upgrade and speed up fitting

  aarmey

  committed
  4e1d3ae

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Commits on Feb 23, 2024

• Upgrade packages and clean a bit

  aarmey

  committed
  316e8e1

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• Linting fix

  

  Aaron Meyer

  committed
  76ae5e5

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Commits on Feb 2, 2024

• Clear out numba

  

  Aaron Meyer

  committed
  0bf4d4f

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• Cleanup

  

  Aaron Meyer

  committed
  83cda39

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• Black formatting

  

  Aaron Meyer

  committed
  da3c3fb

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Commits on Feb 1, 2024

• Remove more extraneous code

  aarmey

  committed
  a7672d0

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Commits on Jan 31, 2024

• Simplify code a bit by removing separate leaves accounting

  aarmey

  committed
  7b5fb01

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Commits on Jan 29, 2024

• Update packages

  aarmey

  committed
  0a9893f

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Commits on Oct 31, 2023

• Black formatting, remove autopep8

  

  Aaron Meyer

  committed
  7a406f1

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Commits on May 27, 2023

• Upgrade packages

  aarmey

  committed
  1c8cef6

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Commits on Apr 9, 2023

• Upgrade to work with Python 3.11

  aarmey

  committed
  2d255f3

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Commits on Mar 13, 2023

• Pre-calculate cell relationships (#984)

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  aarmey

  and

  Farnazmdi

  authored
  a25ca88

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Commits on Mar 7, 2023

• autopep8 action fixes (#985)

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  github-actions[bot]

  and

  aarmey

  authored
  ce3e697

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Commits on Mar 6, 2023

• Clean a bit more (#982)

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  aarmey

  authored
  4cbc7e6

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• autopep8 action fixes (#983)

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  github-actions[bot]

  and

  aarmey

  authored
  d147032

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Commits on Mar 3, 2023

• set up random seed for reproducible results (#981)

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  Farnazmdi

  and

  aarmey

  authored
  f53f5a8

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Commits on Feb 9, 2023

• autopep8 action fixes (#980)

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  github-actions[bot]

  and

  aarmey

  authored
  35321c8

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Commits on Feb 8, 2023

• Generations and parents by index array (#964)

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  aarmey

  authored
  3364cd2

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• Changes to consolidate information stored within LineageTree (#979)

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  aarmey

  and

  Farnazmdi

  authored
  55e6d93

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Commits on Feb 7, 2023

• removed pickle files (#978)

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  Farnazmdi

  authored
  a796650

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• autopep8 action fixes (#977)

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  github-actions[bot]

  and

  aarmey

  authored
  1a407c1

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Commits on Feb 5, 2023

• Cleanup (#976)

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  aarmey

  authored
  7acc3c2

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• Cross validation with equal transitions (#957)

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  Farnazmdi

  and

  aarmey

  authored
  97c449f

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• autopep8 action fixes (#975)

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  github-actions[bot]

  and

  aarmey

  authored
  335e098

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• files updated (#968)

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  Farnazmdi

  authored
  1c08d15

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