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  1. CroCoDeEL CroCoDeEL Public

    CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

    Python 24

  2. meteor meteor Public

    Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes)…

    Python 22

  3. ESKRIM ESKRIM Public

    ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

    Python 5

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