Identification performance comparison

Requirements

• Java (version depends on Nextflow)
• Nextflow
• Docker
• make

Usage

1. Build and download the Docker images: make docker-imgs
2. Run the workflows

   nextflow run -profile docker src/main.nf --raws <FOLDER_WITH_RAW_FILES> ... 

Development / Contribution

• Nextflow is going into src/*
• Each process should use a container
• Make sure to put the each container download or build into the Makefile
• Python scripts are going into bin/ with the shebang #!/usr/bin/env python. Make it executable.
• Python dependencies are going into requirements.txt
• Any binary dependency for the Python Docker container are is going into environment.yml