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Commits on Jan 29, 2025

• Version bump to 1.0.12

  mdbloice

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• Changed to more modern f-strings for formatting.

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Commits on Jan 28, 2025

• Version bump to 1.0.11

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• Removed .functional import from __init__.py until this code is ready.

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• Renamed instances of np.matrix() to np.array()

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• Merge branch 'master' of github.com:mdbloice/Pyrea

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• Variables renamed

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Commits on Sep 12, 2024

• Fixed broken link to Read the Docs location

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Commits on May 30, 2023

• Formatting of journal citation in README

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• Update README.md to reflect Journal of Biomedical Informatics publication

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• Update CITATION.cff to reflect published JBI article

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Commits on Apr 19, 2023

• Version bump to 1.0.10

  mdbloice

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• Table formatting in Nutrimouse genetic algorithm/mvlearn comparison notebook.

  mdbloice

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• Added segment to README describing and linking to Nutrimouse notebook.

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• Added link to Nutrimouse notebook from README

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• Re-ran Parea 2 with updated parameters.

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• Parea 2 genetic optimised function now returns formatted parameters.

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• Added conclusion section to notebook, compared mnvlearn etc.

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Commits on Apr 18, 2023

• Added helper function for calling Parea_2 using learned hyper-parameters.

  mdbloice

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• Added Parea 2 genetic algorithm results

  mdbloice

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• Tab formatting

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• Changed spectral clustering default affinity from RBF to nearest neighbours.

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• Parea_2 genetic algorithm added.

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• Fixed missing variable name in data load.

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• Fixes Agreement class's return type format.

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• Fixes for agreement fusion method in spectral clustering.

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• Added mvlearn multi-view clustering algorithms for comparison with Parea

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Commits on Apr 17, 2023

• Spectral clustering genetic algorithm working. Configurable genetic algorithm parameters.

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• Spectral and hierarchical clustering examples now complete.

  mdbloice

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  a1d8a0e

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• Added ability to change population size and number of generations use for Parea 1 genetic algorithm.

  mdbloice

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• Parea_1 and Parea_1 genetic can now handle arbitrary numbers of views.

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• Finished hierarchical clustering on Nutrimouse example.

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• Fixed syntax errors in parea_1_genetic_spectral()

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• Added spectral clustering functions. These will be renamed in a future update. Internal use only

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• Merge branch 'master' of github.com:mdbloice/Pyrea

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