A command-line tool for retrieving annotations from the NCBI SRA database.
It uses NCBI's Entrez Programming Utilities under the hood to query and retrieve Run-level and Sample-level annotation from the SRA database. Learn more about E-Utilities here: https://www.ncbi.nlm.nih.gov/books/NBK25499/
pip install -r requirements.txt
sra-annotator [-q] [-o OUTPUT] [-m {quick,full}] [-f] [-d DICTIONARY] [-v] [-h] query
-
User must specify a query term or use
-qto input a list of SRA accessions. An input file or search keyword is required. -
arguments shown in
[]are optional.
Checkout the Wiki page for details.