.. image:: https://github.com/matthiaskoenig/sbmlutils/raw/develop/docs_builder/images/sbmlutils-logo-60.png :align: left :alt: sbmlutils logo
sbmlutils is a collection of python utilities for working with
SBML models implemented on top of
libsbml <http://sbml.org/Software/libSBML>__ and other libraries
with source code available from https://github.com/matthiaskoenig/sbmlutils <https://github.com/matthiaskoenig/sbmlutils>__.
Features include among others
- helper functions for model creation, manipulation, and annotation
- HTML reports of SBML models
https://sbml4humans.de <https://sbml4humans.de>__. - file converters (XPP)
The documentation is available on https://sbmlutils.readthedocs.io <https://sbmlutils.readthedocs.io>.
If you have any questions or issues please open an issue <https://github.com/matthiaskoenig/sbmlutils/issues>.
.. image:: docs/presentations/reproducibility_center_2021/screenshot.png :target: https://youtu.be/SxIq8qeXxD0?t=1261 :alt: sbmlutils introduction :height: 200px
.. image:: https://zenodo.org/badge/55952847.svg :target: https://zenodo.org/badge/latestdoi/55952847 :alt: Zenodo DOI
Contributions are always welcome! Please read the contributing guidelines <https://github.com/matthiaskoenig/sbmlutils/blob/develop/.github/CONTRIBUTING.rst>__ to
get started.
- Source Code: MIT
- Documentation:
CC BY-SA 4.0 <http://creativecommons.org/licenses/by-sa/4.0/>__
Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany)
within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054)
and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151
"QuaLiPerF <https://qualiperf.de>__ (Quantifying Liver Perfusion-Function Relationship in Complex Resection -
A Systems Medicine Approach)" by grant number 436883643 and by grant number
465194077 (Priority Programme SPP 2311, Subproject SimLivA).
SBML4Humans was funded as part of Google Summer of Code 2021 <https://summerofcode.withgoogle.com/>__.
Matthias König has received funding from the EOSCsecretariat.eu which has received funding
from the European Union's Horizon Programme call H2020-INFRAEOSC-05-2018-2019, grant Agreement number 831644.
sbmlutils is available from pypi <https://pypi.python.org/pypi/sbmlutils>__ and
can be installed via::
pip install sbmlutils
tkinter is required which can be installed on linux via::
apt-get install python-tk
apt-get install python3-tk
Please see the respective installation instructions for your operating system.
The latest develop version can be installed via::
pip install git+https://github.com/matthiaskoenig/sbmlutils.git@develop
Or via cloning the repository and installing via::
git clone https://github.com/matthiaskoenig/sbmlutils.git
cd sbmlutils
pip install -e .
To install for development use::
pip install -e .[development]
© 2017-2024 Matthias König