Rmd source files for the HarvardX series PH525x

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

A great intro dataset for data exploration & visualization (alternative to iris).

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Row-oriented workflows in R with the tidyverse

Lightweight markup language - document once, include anywhere

Differential analysis of RNA-Seq

Quick mining and visualization of NGS data by integrating genomic databases

Multi-Omics Factor Analysis

R package for DNA methylation analysis

Codebook from my GWAS cookbook

R data package for annotating/converting Gene IDs

R package for analysing proteomics data

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

Data Analysis and Statistical Inference, Duke University

Adapters for trimming

A tutorial on structural variant calling for short read sequencing data

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

A demo and tutorial for how to use git and singularity to make your research more portable and reproducible

Subsampling of high-throughput sequencing count data

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom