Merge branch 'main' into stylesheetss

Author: dstansby

.github/workflows/test_and_deploy.yml

@@ -17,6 +17,7 @@ jobs:
     name: ${{ matrix.platform }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.platform }}
     strategy:
+      fail-fast: false
       matrix:
         platform: [ubuntu-latest, macos-latest, windows-latest]
         python-version: ['3.8', '3.9', '3.10']

docs/guide/index.rst

@@ -4,4 +4,5 @@ Guide
 .. toctree::
    :maxdepth: 1
 
+   user_guide
    third_party

docs/guide/user_guide.rst

@@ -0,0 +1,38 @@
+User guide
+==========
+
+Overview
+--------
+``napari-matplotlib`` contains a number of different ``napari`` Widgets. Each
+widget is designed to map one or more ``napari`` Layers on to a ``matplotlib`` plot.
+As an example, the `~.HistogramWidget` is used to
+map one or more Image layers on to a 1D histogram plot.
+
+The widgets split into two categories:
+
+Layer plotting
+~~~~~~~~~~~~~~
+These widgets plot the data stored directly in napari layers.
+Currently available are widgets to plot:
+
+- 1D histograms
+- 2D scatter plots (switching to 2D histograms for a large number of points)
+- 1D slice line plots
+
+To use these:
+
+1. Open the desired widget using the ``Plugins > napari-matplotlib`` menu in napari.
+2. Select the required number of layers using the napari layers list in the bottom left-hand side of the window.
+
+Features plotting
+~~~~~~~~~~~~~~~~~
+These widgets plot the data stored in the ``.features`` attribute of individual napari layers.
+Currently available are:
+
+- 2D scatter plots of two features against each other.
+
+To use these:
+
+1. Open the desired widget using the ``Plugins > napari-matplotlib`` menu in napari.
+2. Select a single layer that has a features table using the napari layers list in the bottom left-hand side of the window.
+3. Use the drop down menu(s) under the Matplotlib figure to select the feature(s) to plot.