Another replacement

Author: roed314

.devcontainer/portability-updateContent.sh

@@ -5,14 +5,14 @@
 # The script assumes that it is run from SAGE_ROOT.
 #
 # If "config.log" or "logs" are symlinks (for example, created by 'tox -e local-...',
-# or after https://trac.sagemath.org/ticket/33262), they might point outside of
+# or after https://github.com/sagemath/sage/issues/33262), they might point outside of
 # the dev container, so remove them. Likewise for upstream.
 for f in config.log logs upstream; do
     if [ -L $f ]; then
         rm -f $f
     fi
 done
-# If possible (ensured after https://trac.sagemath.org/ticket/33262), keep the
+# If possible (ensured after https://github.com/sagemath/sage/issues/33262), keep the
 # logs in the container.
 if [ ! -d logs ]; then
     ln -s /sage/logs logs

.github/workflows/ci-macos.yml

@@ -38,7 +38,7 @@ jobs:
       matrix:
         stage: ["1", "2", "2-optional-0-o", "2-optional-p-z", "2-experimental-0-o", "2-experimental-p-z"]
         # python3_xcode is only accepted if enough packages are available from the system
-        # --> to test "minimal", we would need https://trac.sagemath.org/ticket/30949
+        # --> to test "minimal", we would need https://github.com/sagemath/sage/issues/30949
         tox_env: [homebrew-macos-usrlocal-minimal, homebrew-macos-usrlocal-standard, homebrew-macos-usrlocal-maximal, homebrew-macos-usrlocal-python3_xcode-standard, conda-forge-macos-minimal, conda-forge-macos-standard, conda-forge-macos-maximal]
         xcode_version_factor: [default]
         os: [ macos-11, macos-12 ]

.github/workflows/ci-wsl.yml

@@ -13,7 +13,7 @@ jobs:
   windows:
     runs-on: windows-latest
     name: Ubuntu 20.04
-    # Following https://trac.sagemath.org/ticket/25206#comment:63
+    # Following https://github.com/sagemath/sage/issues/25206#comment:63
     steps:
     - name: Configure git
       run: git config --global core.symlinks true

Makefile

@@ -31,7 +31,7 @@ SAGE_ROOT_LOGS = logs
 
 # The --stop flag below is just a random flag to induce graceful
 # breakage with non-GNU versions of make.
-# See https://trac.sagemath.org/ticket/24617
+# See https://github.com/sagemath/sage/issues/24617
 
 # Defer unknown targets to build/make/Makefile
 %::
@@ -259,8 +259,8 @@ TEST_FILES = --all
 TEST_FLAGS =
 
 # When the documentation is installed, "optional" also includes all tests marked 'sagemath_doc_html',
-# see https://trac.sagemath.org/ticket/25345, https://trac.sagemath.org/ticket/26110, and
-# https://trac.sagemath.org/ticket/32759
+# see https://github.com/sagemath/sage/issues/25345, https://github.com/sagemath/sage/issues/26110, and
+# https://github.com/sagemath/sage/issues/32759
 TEST_OPTIONAL = sage,optional
 
 # Keep track of the top-level *test* Makefile target for logging.

README.md

@@ -329,7 +329,7 @@ in the Installation Guide.
     manager.
 
     For a large [list of Sage
-    packages](https://trac.sagemath.org/ticket/27330), Sage is able to
+    packages](https://github.com/sagemath/sage/issues/27330), Sage is able to
     detect whether an installed system package is suitable for use with
     Sage; in that case, Sage will not build another copy from source.
 

build/bin/sage-bootstrap-python

@@ -30,7 +30,7 @@ SAGE_ORIG_PATH=${NEW_PATH%%':'}
 # Also, Trac #20023 removed the vendored argparse library from sage_bootstrap,
 # so we test that python is new enough (>= 2.7) to run it.
 #
-# See https://trac.sagemath.org/ticket/29090
+# See https://github.com/sagemath/sage/issues/29090
 
 # Trac #29890: Our first choice is "python", not "python3". This is to avoid
 # a defect of sage_bootstrap on macOS regarding SSL URLs.

build/bin/sage-dist-helpers

@@ -166,7 +166,7 @@ sdh_configure() {
     echo "Configuring $PKG_NAME"
     # Run all configure scripts with bash to work around bugs with
     # non-portable scripts.
-    # See https://trac.sagemath.org/ticket/24491
+    # See https://github.com/sagemath/sage/issues/24491
     if [ -z "$CONFIG_SHELL" ]; then
         export CONFIG_SHELL=`command -v bash`
     fi
@@ -290,7 +290,7 @@ sdh_pip_install() {
 
 sdh_pip_editable_install() {
     echo "Installing $PKG_NAME (editable mode)"
-    # Until https://trac.sagemath.org/ticket/34209 switches us to PEP 660 editable wheels
+    # Until https://github.com/sagemath/sage/issues/34209 switches us to PEP 660 editable wheels
     export SETUPTOOLS_ENABLE_FEATURES=legacy-editable
     python3 -m pip install --verbose --no-deps --no-index --no-build-isolation --isolated --editable "$@" || \
         sdh_die "Error installing $PKG_NAME"

build/bin/sage-flock

@@ -11,7 +11,7 @@
 # This is originally motivated by pip, but has since been generalized.  We
 # should avoid running pip while uninstalling a package because that is prone
 # to race conditions. This script can be used to run pip under a lock.  For
-# details, see https://trac.sagemath.org/ticket/21672
+# details, see https://github.com/sagemath/sage/issues/21672
 
 try:
     import sage_bootstrap

build/bin/sage-site

@@ -184,7 +184,7 @@ if [ "$1" = '-i' ]; then
     for PKG in $PACKAGES; do
         echo
         # Check that $PKG is actually a Makefile target
-        # See https://trac.sagemath.org/ticket/25078
+        # See https://github.com/sagemath/sage/issues/25078
         if ! echo "$ALL_TARGETS" | grep "^${PKG}$" >/dev/null; then
             echo >&2 "Error: package '$PKG' not found"
             echo >&2 "Note: if it is an old-style package, installing these is no longer supported"

build/bin/sage-spkg

@@ -686,7 +686,7 @@ echo "Copying package files from temporary location $SAGE_DESTDIR to $SAGE_INST_
 if [ -d "$SAGE_DESTDIR" ]; then
     # Some `find` implementations will put superfluous slashes in the
     # output if we give them a directory name with a slash; so make sure
-    # any trailing slash is removed; https://trac.sagemath.org/ticket/26013
+    # any trailing slash is removed; https://github.com/sagemath/sage/issues/26013
     PREFIX="${SAGE_DESTDIR_LOCAL%/}"
 
     rm -f "$PREFIX"/lib/*.la

build/bin/sage-spkg-info

@@ -116,10 +116,10 @@ else
         echo "However, these system packages will not be used for building Sage"
         if [ -f "$PKG_SCRIPTS"/install-requires.txt ]; then
             echo "because using Python site-packages is not supported by the Sage distribution;"
-            echo "see https://trac.sagemath.org/ticket/29023"
+            echo "see https://github.com/sagemath/sage/issues/29023"
         else
             echo "because spkg-configure.m4 has not been written for this package;"
-            echo "see https://trac.sagemath.org/ticket/27330"
+            echo "see https://github.com/sagemath/sage/issues/27330"
         fi
     fi
 fi

build/bin/sage-venv

@@ -38,7 +38,7 @@ if options.upgrade and options.clear:
     raise ValueError('you cannot supply --upgrade and --clear together.')
 
 if sys.platform == 'cygwin':
-    # default for Cygwin; see https://trac.sagemath.org/ticket/30149
+    # default for Cygwin; see https://github.com/sagemath/sage/issues/30149
     use_symlinks = False
 else:
     # default for posix

build/make/Makefile.in

@@ -78,7 +78,7 @@ DUMMY_PACKAGES = @SAGE_DUMMY_PACKAGES@
 
 # Set to the path to Sage's GCC (if GCC is installed) to force rebuilds
 # of packages if GCC changed.
-# See m4/sage_spkg_collect.m4 and https://trac.sagemath.org/ticket/24703
+# See m4/sage_spkg_collect.m4 and https://github.com/sagemath/sage/issues/24703
 GCC_DEP = @SAGE_GCC_DEP@
 
 # Versions of all the packages, in the format

build/pkgs/_prereq/distros/cygwin.txt

@@ -12,14 +12,14 @@
 binutils
 make
 m4
-# a system python is needed for downloading the sage packages, https://trac.sagemath.org/ticket/29090
+# a system python is needed for downloading the sage packages, https://github.com/sagemath/sage/issues/29090
 python39-urllib3 python39
 perl
 perl-ExtUtils-MakeMaker
 tar
 gcc-core
 gcc-g++
-# Needed according to embray at https://trac.sagemath.org/ticket/26964:
+# Needed according to embray at https://github.com/sagemath/sage/issues/26964:
 # The need for which comes [...] from MPIR's configure script
 findutils
 which

build/pkgs/_prereq/distros/fedora.txt

@@ -15,7 +15,7 @@
 binutils
 make
 m4
-# a system python is needed for downloading the sage packages, https://trac.sagemath.org/ticket/29090
+# a system python is needed for downloading the sage packages, https://github.com/sagemath/sage/issues/29090
 python3
 perl
 perl-ExtUtils-MakeMaker
@@ -26,11 +26,11 @@ gcc
 # configure: error: in `/sage':
 # configure: error: C++ preprocessor "/lib/cpp" fails sanity check
 gcc-c++
-# Needed according to embray at https://trac.sagemath.org/ticket/26964:
+# Needed according to embray at https://github.com/sagemath/sage/issues/26964:
 # The need for which comes [...] from MPIR's configure script
 findutils
 which
-# Needed for pcre configure, see https://trac.sagemath.org/ticket/29129:
+# Needed for pcre configure, see https://github.com/sagemath/sage/issues/29129:
 diffutils
 # Needed for openssl 3.0
 perl-IPC-Cmd

build/pkgs/cddlib/spkg-configure.m4

@@ -16,7 +16,7 @@ SAGE_SPKG_CONFIGURE([cddlib], [
     AC_CHECK_PROGS(SCDD, [scdd_gmp scdd])
     AS_IF([test x$SCDD = x], [sage_spkg_install_cddlib=yes])
 
-    dnl https://trac.sagemath.org/ticket/30319
+    dnl https://github.com/sagemath/sage/issues/30319
     AS_IF([test -n "$CDDEXEC"], [
         AC_MSG_CHECKING([whether $CDDEXEC --redcheck works correctly for real input])
         cat > conftest.ine <<EOF

build/pkgs/cmake/spkg-check.in

@@ -1,8 +1,8 @@
-# Do not run a test suite: see https://trac.sagemath.org/ticket/30093.
+# Do not run a test suite: see https://github.com/sagemath/sage/issues/30093.
 #
 # - The test suite takes a long time and can fail in minor ways.
 # - If some major aspect of cmake fails, it only affects the build
 #   process of Sage, not the mathematical correctness of its results.
 # - If some minor aspect of cmake fails, it won't affect anything about Sage.
 
-echo "We skip the test suite for cmake: see https://trac.sagemath.org/ticket/30093."
+echo "We skip the test suite for cmake: see https://github.com/sagemath/sage/issues/30093."

build/pkgs/curl/spkg-check.in

@@ -1,8 +1,8 @@
-# Do not run a test suite: see https://trac.sagemath.org/ticket/30093.
+# Do not run a test suite: see https://github.com/sagemath/sage/issues/30093.
 #
 # - The test suite takes a long time and can fail in minor ways.
 # - If some major aspect of curl fails, it only affects the build
 #   process of Sage, not the mathematical correctness of its results.
 # - If some minor aspect of curl fails, it won't affect anything about Sage.
 
-echo "We skip the test suite for curl: see https://trac.sagemath.org/ticket/30093."
+echo "We skip the test suite for curl: see https://github.com/sagemath/sage/issues/30093."

build/pkgs/ecl/spkg-install.in

@@ -2,7 +2,7 @@ cd src
 
 if [ "$UNAME" = "CYGWIN" ]; then
     # Some of ECL's sources rely on GNU-isms that are allowed by default on
-    # most glibcs, but not in newlib; https://trac.sagemath.org/ticket/25057
+    # most glibcs, but not in newlib; https://github.com/sagemath/sage/issues/25057
     CFLAGS="$CFLAGS -D_GNU_SOURCE"
     CXXFLAGS="$CXXFLAGS -D_GNU_SOURCE"
 fi

build/pkgs/elliptic_curves/spkg-install.py

@@ -60,7 +60,7 @@ def install_ellcurves():
     ellcurves_root = os.path.join(SAGE_SHARE, 'ellcurves')
 
     # Remove previous installs (possibly with bad permissions, see
-    # https://trac.sagemath.org/ticket/21641)
+    # https://github.com/sagemath/sage/issues/21641)
     import shutil
     try:
         shutil.rmtree(ellcurves_root)

build/pkgs/fflas_ffpack/spkg-install.in

@@ -24,7 +24,7 @@ if [ "$SAGE_FAT_BINARY" = yes ]; then
 fi
 
 # Need to use 'bash' for configure, see
-# https://trac.sagemath.org/ticket/23451
+# https://github.com/sagemath/sage/issues/23451
 if [ -z "$CONFIG_SHELL" ]; then
     export CONFIG_SHELL=`command -v bash`
 fi

build/pkgs/gap/spkg-install.in

@@ -53,7 +53,7 @@ sdh_install pkg/GAPDoc-* pkg/primgrp-* pkg/SmallGrp-* pkg/transgrp "$GAP_ROOT"/p
 # typically "expected" to be loaded: These are the default packages that are
 # autoloaded at GAP startup (via the PackagesToLoad UserPreference) with an
 # out-of-the-box GAP installation; see
-# https://trac.sagemath.org/ticket/22626#comment:393 for discussion on this
+# https://github.com/sagemath/sage/issues/22626#comment:393 for discussion on this
 #
 # Also include atlasrep which is a dependency of tomlib
 sdh_install \
@@ -96,7 +96,7 @@ done
 # be going away.  This breaks the build toolchain for some compiled GAP
 # packages.  We need to replace these paths with the final GAP_ROOT path.  The
 # below will work so long as neither of these paths contain '|', and if they do
-# then god help you.  https://trac.sagemath.org/ticket/27218
+# then god help you.  https://github.com/sagemath/sage/issues/27218
 sed -i -e "s|$GAP_BUILD_ROOT|$GAP_ROOT|g" \
     "$SAGE_DESTDIR$SAGE_BIN/gac" "$DESTDIR_GAP_ROOT/sysinfo.gap" \
     "$DESTDIR_GAP_ROOT/bin/gap.sh" "$DESTDIR_GAP_ROOT/doc/make_doc" || \

build/pkgs/gc/spkg-install.in

@@ -3,9 +3,9 @@ cd src
 GC_CONFIGURE="--enable-large-config"
 
 if [ "$UNAME" = "CYGWIN" ]; then
-    # See https://trac.sagemath.org/ticket/22694
+    # See https://github.com/sagemath/sage/issues/22694
     GC_CONFIGURE="$GC_CONFIGURE --enable-threads=posix --enable-handle-fork --enable-shared --disable-static"
-    # Force use of mmap on Cygwin https://trac.sagemath.org/ticket/23973
+    # Force use of mmap on Cygwin https://github.com/sagemath/sage/issues/23973
     export CFLAGS="$CFLAGS -DUSE_MMAP -DUSE_MUNMAP"
 fi
 

build/pkgs/gcc/dependencies

@@ -5,5 +5,5 @@ NOTE: all dependencies of GCC must be order-only dependencies
 (appearing after the | symbol). This is to prevent rebuilds of GCC
 even if the dependencies are updated. There is logic in the top-level
 configure file to ensure that GCC is rebuilt anyway if required. See
-https://trac.sagemath.org/ticket/24907
+https://github.com/sagemath/sage/issues/24907
 ------------------------------------------------------------------------

build/pkgs/gcc/spkg-configure.m4

@@ -78,7 +78,7 @@ SAGE_SPKG_CONFIGURE_BASE([gcc], [
             SAGE_MUST_INSTALL_GCC([gcc is already installed in SAGE_LOCAL])
 
             # Check whether it actually works...
-            # See https://trac.sagemath.org/ticket/24599
+            # See https://github.com/sagemath/sage/issues/24599
             SAGE_CHECK_BROKEN_GCC()
             if test x$SAGE_BROKEN_GCC = xyes; then
                 # Prentend that GCC is not installed.
@@ -167,7 +167,7 @@ SAGE_SPKG_CONFIGURE_BASE([gcc], [
                 ],
                 [1[[3-9]].*], [
                     # Install our own GCC if the system-provided one is newer than 12.x.
-                    # See https://trac.sagemath.org/ticket/29456
+                    # See https://github.com/sagemath/sage/issues/29456
                     SAGE_SHOULD_INSTALL_GCC([$CXX is g++ version $GXX_VERSION, which is too recent for this version of Sage])
                 ])
             fi

build/pkgs/gdb/distros/conda.txt

@@ -1,2 +1,2 @@
-# Disabled for now because of https://trac.sagemath.org/ticket/30845#comment:269
+# Disabled for now because of https://github.com/sagemath/sage/issues/30845#comment:269
 # gdb

build/pkgs/gfan/patches/fix-int64-for-32bit-archs.patch

@@ -3,7 +3,7 @@ On 32-bit architectures, longs are only 32 bits. The resulting overflow was
 causing an infinite loop in the 0602ResultantFanProjection test.
 
 References:
-https://trac.sagemath.org/ticket/32088
+https://github.com/sagemath/sage/issues/32088
 https://salsa.debian.org/math-team/gfan/-/commit/acaaa70
 https://github.com/void-linux/void-packages/pull/34182
 

build/pkgs/gfan/spkg-install.in

@@ -8,7 +8,7 @@ cd src
 find src -type f -print0 | xargs -0 sed -i.bak "s/log2/logger2/g"
 
 # To let testsuite/0009RenderStairCase pass on 32bit machines
-# See https://trac.sagemath.org/ticket/32088
+# See https://github.com/sagemath/sage/issues/32088
 case "$($CC -dumpmachine)" in
     i[3456]86*)
         CXXFLAGS+=" -ffloat-store"

build/pkgs/gfortran/spkg-configure.m4

@@ -88,7 +88,7 @@ SAGE_SPKG_CONFIGURE([gfortran], [
                     ],
                     [1[[3-9]].*], [
                         # Install our own gfortran if the system-provided one is newer than 12.x.
-                        # See https://trac.sagemath.org/ticket/29456, https://trac.sagemath.org/ticket/31838
+                        # See https://github.com/sagemath/sage/issues/29456, https://github.com/sagemath/sage/issues/31838
                         SAGE_MUST_INSTALL_GFORTRAN([$FC is version $GFORTRAN_VERSION, which is too recent for this version of Sage])
                     ])
             ])

build/pkgs/giac/patches/cygwin-icas.patch

@@ -1,6 +1,6 @@
 Disable threaded eval function on Cygwin since it's currently
 buggy, and not strictly needed in the first place since we don't
-build giac with FLTK support; see https://trac.sagemath.org/ticket/27385
+build giac with FLTK support; see https://github.com/sagemath/sage/issues/27385
 --- a/src/icas.cc	2018-12-22 17:08:24.000000000 +0100
 +++ b/src/icas.cc	2019-03-06 14:38:19.814030200 +0100
 @@ -160,7 +160,7 @@

build/pkgs/giac/patches/isnan-conflict.patch

@@ -1,7 +1,7 @@
 Just always use std::isnan and std::isinf so there is no risk of
 conflicting with the libc math.h equivalents thereof.
 
-See https://trac.sagemath.org/ticket/27263
+See https://github.com/sagemath/sage/issues/27263
 --- a/src/global.cc	2019-02-12 15:49:03.082594000 +0000
 +++ b/src/global.cc	2019-02-12 15:49:43.438594000 +0000
 @@ -4139,11 +4139,7 @@

build/pkgs/giac/patches/pari_2_11.patch

@@ -1,6 +1,6 @@
 Change test output for PARI 2.11
 
-See https://trac.sagemath.org/ticket/25567
+See https://github.com/sagemath/sage/issues/25567
 and https://xcas.univ-grenoble-alpes.fr/forum/viewtopic.php?f=4&t=2102
 
 diff -ru a/check/TP11-sol.cas.out1 b/check/TP11-sol.cas.out1

build/pkgs/glpk/spkg-install.in

@@ -26,7 +26,7 @@ sdh_configure --with-gmp --disable-static
 sdh_make
 
 # Remove old libraries to make sure we can downgrade it if needed.
-# See https://trac.sagemath.org/ticket/23596#comment:4 and later.
+# See https://github.com/sagemath/sage/issues/23596#comment:4 and later.
 rm -f "$SAGE_LOCAL"/lib/libglpk.*
 
 sdh_make_install

build/pkgs/glucose/spkg-install.in

@@ -8,7 +8,7 @@ sdh_make
 sdh_install glucose ${SAGE_LOCAL}/bin/
 cd ..
 
-# Possible license issue, see warning below and discussion on https://trac.sagemath.org/ticket/26361
+# Possible license issue, see warning below and discussion on https://github.com/sagemath/sage/issues/26361
 cd parallel
 sdh_make
 sdh_install glucose-syrup ${SAGE_LOCAL}/bin/

build/pkgs/jupyterlab/requirements.txt

@@ -1,3 +1,3 @@
 jupyterlab ~= 3.3
-# See https://trac.sagemath.org/ticket/33607
+# See https://github.com/sagemath/sage/issues/33607
 jupyterlab-server < 2.11

build/pkgs/libgd/spkg-install.in

@@ -6,7 +6,7 @@ if [ "$UNAME" = "CYGWIN" ]; then
     # Compiling with vpx support creates a broken library in some cases
     # because the vpx package itself is broken on some older Cygwin versions;
     # we don't need this feature so safer to just disable
-    # https://trac.sagemath.org/ticket/27970
+    # https://github.com/sagemath/sage/issues/27970
     LIBGD_CONFIGURE="--without-vpx $LIBGD_CONFIGURE"
 fi
 if [ -n "$SAGE_FREETYPE_PREFIX" ]; then

build/pkgs/linbox/spkg-install.in

@@ -26,7 +26,7 @@ LINBOX_CONFIGURE="--without-fplll $LINBOX_CONFIGURE"
 # We disable openmp because of build failures, see
 # https://github.com/sagemath/sage/issues/17635#comment:67
 # We disable ocl because of build failures, see
-# https://trac.sagemath.org/ticket/32076
+# https://github.com/sagemath/sage/issues/32076
 sdh_configure --with-default="$SAGE_LOCAL" \
               --disable-static --disable-openmp --without-ocl \
               $LINBOX_CONFIGURE