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Commits on May 6, 2019

• Merge branch 'master' of github.com:marsicoLab/TriPepSVM

  

  Roman Schulte-Sasse

  committed
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• Specify python and packages in readme

  

  Roman Schulte-Sasse

  authored
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• report positive and negative set size

  

  Annkatrin Bressin

  committed
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• cange http to https

  

  Annkatrin Bressin

  committed
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• add scriptDir to posDataset.sh

  

  Annkatrin Bressin

  committed
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Commits on Feb 7, 2019

• Intersection between bacteria and all three organisms written to file.

  

  Roman Schulte-Sasse

  committed
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Commits on Feb 5, 2019

• Updated Venn diagram for overlap on E.Coli proteome.

  

  Roman Schulte-Sasse

  committed
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• add new e.coli summary tableS

  

  Annkatrin Bressin

  committed
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• New proteome prediction for E.Coli

  

  Roman Schulte-Sasse

  committed
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Commits on Feb 4, 2019

• add proteome prediction and final table generation

  

  Annkatrin Bressin

  committed
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• add important k-mer tables for human, salmonella and e.colI

  

  Annkatrin Bressin

  committed
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• add important kmer tables for human, salmonella and e.colI

  

  Annkatrin Bressin

  committed
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• Added runtimes of RBPPred and corrected proteome prediction for E.coli.

  

  Roman Schulte-Sasse

  committed
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• Updated figures for revision (figures 2, 3, S5, S8).

  

  Roman Schulte-Sasse

  committed
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• Merge branch 'master' of github.molgen.mpg.de:sasse/TriPepSVM

  

  Roman Schulte-Sasse

  committed
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• Updated balanced training results.

  

  Roman Schulte-Sasse

  committed
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Commits on Jan 31, 2019

• re-run e.coli using optimal class weightS

  

  Annkatrin Bressin

  committed
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Commits on Jan 23, 2019

• Moved old prediction with incorrect W_pos and W_neg to .old files and added new predictions with correct weights.

  

  Roman Schulte-Sasse

  committed
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• Performance plots with corrected name for our tool and bigger captions.

  

  Roman Schulte-Sasse

  committed
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• Reintroduce TriPepSVM prediction for human NRBPs test set

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  Roman Schulte-Sasse

  committed
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• Renamed new figures.

  

  Roman Schulte-Sasse

  committed
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Commits on Jan 21, 2019

• add figure revision: runtime, cross-species, change parameter parsin

  

  Annkatrin Bressin

  committed
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Commits on Jan 20, 2019

• Merge branch 'master' of https://github.molgen.mpg.de/sasse/TriPepSVM

  

  Annkatrin Bressin

  committed
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• add E.coli test dataset to paper

  

  Annkatrin Bressin

  committed
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Commits on Jan 14, 2019

• Added balanced performance for E.Coli.

  

  Roman Schulte-Sasse

  committed
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• Changed layout of performance tables for RBPPred.

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  Roman Schulte-Sasse

  committed
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• add ecoli spot seq predition

  

  Annkatrin Bressin

  committed
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Commits on Jan 8, 2019

• Fixed RNApred predictions for e.coli

  

  Roman Schulte-Sasse

  committed
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• Added figure for cross-species overlap.

  

  Roman Schulte-Sasse

  committed
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• Added balanced performance of TriPepSVM for human and Salmonella.

  

  Roman Schulte-Sasse

  committed
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• Added e.coli predictions for us and RNApred.

  

  Roman Schulte-Sasse

  committed
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Commits on Nov 12, 2018

• Positive dataset can be computed again. Fixed bug introduced by new quickGO API.

  

  Roman Schulte-Sasse

  committed
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Commits on Nov 9, 2018

• Script for downloading RBPs from QuickGO in python added.

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  Roman Schulte-Sasse

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Commits on Nov 8, 2018

• Merge branch 'master' of github.molgen.mpg.de:sasse/TriPepSVM

  

  Roman Schulte-Sasse

  committed
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• Updated RNApred data to be used. This removes sequences that were present in the RNApred training data.

  

  Roman Schulte-Sasse

  committed
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