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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1k 100

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 695 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 491 106

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 426 95

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 369 33

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 332 22

Repositories

Showing 10 of 41 repositories
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope’s past year of commit activity
    Python 22 GPL-3.0 8 103 0 Updated Nov 22, 2025
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 369 33 21 0 Updated Nov 21, 2025
  • TTT Public
    marbl/TTT’s past year of commit activity
    Python 3 0 0 0 Updated Nov 17, 2025
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 695 179 4 2 Updated Nov 13, 2025
  • anianns Public

    ANI based satellite annotation

    marbl/anianns’s past year of commit activity
    Python 13 0 1 0 Updated Nov 7, 2025
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 173 MIT 11 4 0 Updated Oct 13, 2025
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 147 27 30 0 Updated Oct 2, 2025
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    137 5 1 0 Updated Sep 26, 2025
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 25 3 0 0 Updated Sep 26, 2025
  • Mash Public

    Fast genome and metagenome distance estimation using MinHash

    marbl/Mash’s past year of commit activity
    C++ 426 95 84 3 Updated Sep 19, 2025
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