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1. clawpack/riemann_book clawpack/riemann_book Public

   An interactive book about the Riemann problem for hyperbolic PDEs, using Jupyter notebooks.

   HTML 279 104

2. msmrd msmrd Public

   A general framework to couple Markov state models (MSM) of molecular kinetics with particle-based reaction-diffusion (RD) simulations.

   C++ 3

3. multiscaleRD multiscaleRD Public

   Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs.

   Python

4. deepRD deepRD Public

   Tools for reaction dynamics and deep learning in a python package

   Jupyter Notebook 2 3