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Benchmark H0-mini

Status: Open.

#98 In mahmoodlab/HEST;

· afilt opened on Apr 7, 2025

Loading raw Xenium data

Status: Open.

#97 In mahmoodlab/HEST;

· ekansh09 opened on Apr 2, 2025

UnboundLocalError: local variable 'pyvips' referenced before assignment

installation

Status: Open.

#95 In mahmoodlab/HEST;

· ShinHyun-soo opened on Feb 27, 2025

Is contrast enhancement applied on extracted patches ?

Status: Open.

#93 In mahmoodlab/HEST;

· abhi1998goyal opened on Feb 6, 2025

Question about Xenium Sample Alignment and Integration

Status: Open.

#92 In mahmoodlab/HEST;

· ymoneych opened on Feb 5, 2025

Error in downloading the EPM cancer Visium data

Status: Open.

#91 In mahmoodlab/HEST;

· aahsan045 opened on Feb 4, 2025

Patching of the BCNB dataset

Status: Open.

#90 In mahmoodlab/HEST;

· hathawayxxh opened on Feb 3, 2025

Multi-channel whole-slide image dataset.

questionFurther information is requestedFurther information is requested

Status: Open.

#84 In mahmoodlab/HEST;

· Algolzw opened on Jan 2, 2025

Barcodes loaded in inconsistent format (different data types based on batch size)

Status: Open.

#62 In mahmoodlab/HEST;

· hugo-ekinge opened on Oct 29, 2024

Do we need to correct the batch effects of given datasets

scientific-discussion

Status: Open.

#43 In mahmoodlab/HEST;

· HelloWorldLTY opened on Aug 30, 2024

high variance genes

scientific-discussion

Status: Open.

#16 In mahmoodlab/HEST;

· jinxixiang opened on Jul 6, 2024