Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Nov 16, 2021

• documentation: added reference to Peyraud et al., fixes #13

  m-jahn

  committed
  00c70c5

  Copy full SHA for 00c70c5

Commits on Sep 7, 2021

• update: changed substrate uptake rates according to new measurements, added flux to PHB

  m-jahn

  committed
  d2cdcdf

  Copy full SHA for d2cdcdf

Commits on Jul 8, 2021

• update: stream lined combined FBA and FSA analysis

  m-jahn

  committed
  6750a5d

  Copy full SHA for 6750a5d

Commits on Jul 7, 2021

• update: corrected 2 reaction directionalities to avoid cycles

  m-jahn

  committed
  570e863

  Copy full SHA for 570e863

• update: changed Q_S calculation to most recent data

  m-jahn

  committed
  f0c3eb0

  Copy full SHA for f0c3eb0

Commits on Jul 28, 2020

• added replenishing reaction for 5-methyltetrahydropteroyltri-l-glutamate (met biosynth)

  m-jahn

  committed
  7e58a21

  Copy full SHA for 7e58a21

Commits on Jul 25, 2020

• added groups to new reactions. Closes #12

  m-jahn

  committed
  ae2805f

  Copy full SHA for ae2805f

• added groups slot to exported table

  m-jahn

  committed
  2f44b5c

  Copy full SHA for 2f44b5c

Commits on Jun 29, 2020

• updated gene reaction rules

  m-jahn

  committed
  2fca311

  Copy full SHA for 2fca311

Commits on Jun 11, 2020

• corrected ETC gene annotation, closes #10

  m-jahn

  committed
  54f3619

  Copy full SHA for 54f3619

• more rigorous test on energy gererating cycles (will now raise error), closes #11

  m-jahn

  committed
  2ba6ac3

  Copy full SHA for 2ba6ac3

Commits on Jun 3, 2020

• removed 4 duplicated reactions for dihydrofolate reductase

  m-jahn

  committed
  638ec2c

  Copy full SHA for 638ec2c

Commits on Jun 1, 2020

• removed superfluous lumped CBB reaction and duplicated PYK reactions

  m-jahn

  committed
  58b2f94

  Copy full SHA for 58b2f94

• added hydrogenases to Escher map

  m-jahn

  committed
  ab1ce1a

  Copy full SHA for ab1ce1a

Commits on May 29, 2020

• updated changelog and folder content sections

  m-jahn

  committed
  9b63163

  Copy full SHA for 9b63163

• added reactions for fully autotrophic growth on H2

  m-jahn

  committed
  9a3a21a

  Copy full SHA for 9a3a21a

• exclude original version of Park model from github repo

  m-jahn

  committed
  569dfce

  Copy full SHA for 569dfce

Commits on May 26, 2020

• removed some duplicated reactions participating in artificial cycles

  m-jahn

  committed
  b630cd8

  Copy full SHA for b630cd8

• Merge branch 'master' into devel

  m-jahn

  committed
  56124df

  Copy full SHA for 56124df

• correct bounds for reactions ASPO1 and ALATA. Closes #9.

  m-jahn

  committed
  e9df3b8

  Copy full SHA for e9df3b8

• correct bounds for reactions ASPO1 and ALATA

  m-jahn

  committed
  e3c4310

  Copy full SHA for e3c4310

• added function for flux sampling

  m-jahn

  committed
  f558e5c

  Copy full SHA for f558e5c

• added tRNA loading reaction for Asn

  m-jahn

  committed
  9394998

  Copy full SHA for 9394998

• added 4 energy transformation reactions

  m-jahn

  committed
  968f4df

  Copy full SHA for 968f4df

Commits on May 20, 2020

• added reaction to complete heme biosynthesis + updated biomass reaction

  m-jahn

  committed
  b8a3b2d

  Copy full SHA for b8a3b2d

• removed/renamed outdated reactions in Escher map, closes #7

  m-jahn

  committed
  e7d7348

  Copy full SHA for e7d7348

Commits on May 19, 2020

• updated gene_reaction_rule for cytochrome oxidases

  m-jahn

  committed
  48a8f69

  Copy full SHA for 48a8f69

Commits on May 18, 2020

• added gene-reaction association for two terminal cytochrome oxidases

  m-jahn

  committed
  bc2d209

  Copy full SHA for bc2d209

• curated some reactions with artificially high flux in FVA

  m-jahn

  committed
  7a7961c

  Copy full SHA for 7a7961c

Commits on May 6, 2020

• function to retrieve and export reaction data

  m-jahn

  committed
  db89400

  Copy full SHA for db89400

Commits on Apr 29, 2020

• fixed bug in gene annotation export

  m-jahn

  committed
  1422183

  Copy full SHA for 1422183

Commits on Apr 27, 2020

• updated README with current numbers

  m-jahn

  committed
  489a969

  Copy full SHA for 489a969

• fixed gene annotation bug closes #6

  m-jahn

  committed
  bf86a0b

  Copy full SHA for bf86a0b

Commits on Apr 20, 2020

• essentiality analysis now returns result table for all genes and reactions

  m-jahn

  committed
  f016cb5

  Copy full SHA for f016cb5

• some corrections of reaction names + update thiamin synthesis pathway

  m-jahn

  committed
  1bb954f

  Copy full SHA for 1bb954f

Pagination

Previous

Next