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python-numpy-intel.scm
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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2013-2022 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2019 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2017, 2021, 2022 Eric Bavier <bavier@posteo.net>
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;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
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(define-module (non-free python-numpy-intel)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages adns)
#:use-module (gnu packages aidc)
#:use-module (gnu packages attr)
#:use-module (gnu packages backup)
#:use-module (gnu packages bash)
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages dbm)
#:use-module (gnu packages django)
#:use-module (gnu packages djvu)
#:use-module (gnu packages docker)
#:use-module (gnu packages documentation)
#:use-module (gnu packages enchant)
#:use-module (gnu packages file)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages fonts)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages gdb)
#:use-module (gnu packages gcc)
#:use-module (gnu packages geo)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages graphics)
#:use-module (gnu packages gsasl)
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages inkscape)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages jupyter)
#:use-module (gnu packages kerberos)
#:use-module (gnu packages libevent)
#:use-module (gnu packages libffi)
#:use-module (gnu packages libidn)
#:use-module (gnu packages libusb)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
#:use-module (gnu packages man)
#:use-module (gnu packages markup)
#:use-module (gnu packages maths)
#:use-module (gnu packages monitoring)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages networking)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages node)
#:use-module (gnu packages ninja)
#:use-module (gnu packages openstack)
#:use-module (gnu packages pcre)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
#:use-module (gnu packages photo)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-compression)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages qt)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
#:use-module (gnu packages regex)
#:use-module (gnu packages sdl)
#:use-module (gnu packages scanner)
#:use-module (gnu packages search)
#:use-module (gnu packages serialization)
#:use-module (gnu packages shells)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages ssh)
#:use-module (gnu packages swig)
#:use-module (gnu packages terminals)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages textutils)
#:use-module (gnu packages time)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages video)
#:use-module (gnu packages web)
#:use-module (gnu packages wxwidgets)
#:use-module (gnu packages base)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages tcl)
#:use-module (gnu packages bdw-gc)
#:use-module (gnu packages serialization)
#:use-module (gnu packages python-xyz)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix hg-download)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (guix build-system python)
#:use-module (guix build-system trivial)
#:use-module (srfi srfi-1)
#:use-module (non-free mkl)
#:use-module (srfi srfi-26))
;; NOTE: when upgrading numpy please make sure that python-numba,
;; python-pandas and python-scipy still build, as these three packages are
;; often used together.
(define-public python-numpy-intel
(package
(name "python-numpy-intel")
(version "1.21.6")
(source
(origin
(method url-fetch)
(uri (string-append
"https://github.com/numpy/numpy/releases/download/v"
version "/numpy-" version ".tar.gz"))
(sha256
(base32
"0b0c5y35rd3mvwfk5is1d5ppfw9nl4d2rgx9xkwh1p0w394wdvyl"))))
(build-system python-build-system)
(arguments
(list
#:modules '((guix build utils)
(guix build python-build-system)
(ice-9 format))
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'parallelize-build
(lambda _
(setenv "NPY_NUM_BUILD_JOBS"
(number->string (parallel-job-count)))))
(add-before 'build 'configure-blas
(lambda* (#:key inputs #:allow-other-keys)
(call-with-output-file "site.cfg"
(lambda (port)
(format port
"\
[mkl]
libraries = mkl_rt
library_dirs = ~a/lib
include_dirs = ~:*~a/include~%" #$(this-package-input "mkl"))))))
(add-before 'build 'fix-executable-paths
(lambda* (#:key inputs #:allow-other-keys)
;; Make /gnu/store/...-bash-.../bin/sh the default shell,
;; instead of /bin/sh.
(substitute* "numpy/distutils/exec_command.py"
(("'/bin/sh'")
(format #f "~s" (search-input-file inputs "bin/bash"))))
;; Don't try to call '/bin/true' specifically.
(substitute* "numpy/core/tests/test_cpu_features.py"
(("/bin/true") (search-input-file inputs "bin/true")))))
;; (delete 'check)
(replace 'check
(lambda* (#:key tests? outputs inputs #:allow-other-keys)
(when tests?
(invoke "./runtests.py" "-vv" "--no-build" "--mode=fast"
"-j" (number->string (parallel-job-count))
;; Contrary to scipy, the runtests.py script of numpy
;; does *not* automatically provide -n when -j is used
;; (see: https://github.com/numpy/numpy/issues/21359).
"--" "-n" (number->string (parallel-job-count))
"-k" (string-append
;; These tests may fail on 32-bit systems (see:
;; https://github.com/numpy/numpy/issues/18387).
"not test_float_remainder_overflow "
"and not test_pareto "
;; This test fails if mkl is in inputs
"and not test_overrides"
;; These tests seem to fail on machines without
;; an FPU is still under investigation upstream.
;; https://github.com/numpy/numpy/issues/20635
#$@(if (target-riscv64?)
`(" and not test_float"
" and not test_fpclass")
'()))))))
)))
(native-inputs
(list python-cython
python-hypothesis-next
python-pytest
python-pytest-xdist
gfortran))
(inputs (list bash mkl))
(home-page "https://numpy.org")
(synopsis "Fundamental package for scientific computing with Python")
(description "NumPy is the fundamental package for scientific computing
with Python. It contains among other things: a powerful N-dimensional array
object, sophisticated (broadcasting) functions, tools for integrating C/C++
and Fortran code, useful linear algebra, Fourier transform, and random number
capabilities.")
(properties
'((upstream-name . "numpy")))
(license license:bsd-3)))