index.rst

Welcome to Hi-C-Analysis's documentation!

.. toctree::
   :maxdepth: 2
   :caption: Contents:

Preprocessing Module

The create_graph function

.. autofunction:: hicanalysis.preprocessing.create_graph

The remove_empty_axis function

.. autofunction:: hicanalysis.preprocessing.remove_empty_axis

The extract_diagonal_blocks function

.. autofunction:: hicanalysis.preprocessing.extract_diagonal_blocks

The get_chromosome_list function

.. autofunction:: hicanalysis.preprocessing.get_chromosome_list

The ooe_normalization function

.. autofunction:: hicanalysis.preprocessing.ooe_normalization

The build_projectors function

.. autofunction:: hicanalysis.preprocessing.build_projectors

The reconstruct_matrix function

.. autofunction:: hicanalysis.preprocessing.reconstruct_matrix

Visualizegraph Module

The weights_distribuion function

.. autofunction:: hicanalysis.visualizegraph.weights_distribuion

The degree_distribution function

.. autofunction:: hicanalysis.visualizegraph.degree_distribution

The plot_chromosome_hics function

.. autofunction:: hicanalysis.visualizegraph.plot_chromosome_hics

The plot_chromosomes_histograms function

.. autofunction:: hicanalysis.visualizegraph.plot_chromosomes_histograms

The plot_matrix function

.. autofunction:: hicanalysis.visualizegraph.plot_matrix

The scatter_plot function

.. autofunction:: hicanalysis.visualizegraph.scatter_plot

The histogram function

.. autofunction:: hicanalysis.visualizegraph.histogram

The show_10_projectors function

.. autofunction:: hicanalysis.visualizegraph.show_10_projectors

The plot_matrix_comparison function

.. autofunction:: hicanalysis.visualizegraph.plot_matrix_comparison

Indices and tables

• :ref:`genindex`
• :ref:`search`