11-ChIPseq.Rmd

# ChIP-seq, Expression Integration {#chip}

## Motif finding in eukaryotes, and ChIP-seq

<iframe width="560" height="315" src="https://www.youtube.com/embed/der5tgPggvE" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

## MACS and ChIP-seq QC

<iframe width="560" height="315" src="https://www.youtube.com/embed/hvE8ZhTKvWU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

## Identify TF interactions from ChIP-seq motifs

<iframe width="560" height="315" src="https://www.youtube.com/embed/OX3_p3VhLpM" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

## TF target genes and expression integration

<iframe width="560" height="315" src="https://www.youtube.com/embed/1ZabK9vooDw" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

## Lab 5 

### MACS Tutorial

<iframe width="560" height="315" src="https://www.youtube.com/embed/nmvlBEF58LE" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

### ChIP-seq QC Tutorial

<iframe width="560" height="315" src="https://www.youtube.com/embed/XR02UaMNBp8" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

### TF Motif Finding Tutorial

<iframe width="560" height="315" src="https://www.youtube.com/embed/fHEz3mB4OdY" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

### TF Collaborator Tutorial

<iframe width="560" height="315" src="https://www.youtube.com/embed/V7wG0zRwvnI" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>