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Add document for how to export annotations from webknossos #28

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Add document for how to export annotations from webknossos
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Jingjing Wu committed Nov 1, 2024
commit 6477da8c7e561aa8cf64d84e5efa2acdcb1d5785
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26 changes: 26 additions & 0 deletions docs/webknossos-export-annotation.md
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Please update the navigation with a link to this file.

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Will do, Thanks!

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# Export Annotations from Webknossos

The following steps provide instructions for downloading annotations from webknossos.

1. Go to Annotations tab and click open on target annotation


![](img/webknossos_annotation.png)

2. Click on Download on dropdown menu

![](img/download.png)

3. Select "Include volume annotations as WKW" on pop out box and click on Download

![](img/download2.png)
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4. Unzip downloaded annotation file

5. Unzip data_Volume.zip under annotation folder

![](img/data_volume.png)

6. Run Script webknossos_annotation.py to save into ome.zarr format following czyx direction.


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