build(repo): Configure Git LFS for large file tracking

This commit introduces Git Large File Storage (LFS) to manage large binary assets, such as 3D models and simulation data, which are unsuitable for direct versioning in Git.

The main changes include:
- Adding a `.gitattributes` file to specify which file extensions (`.vtu`, `.vtp`, `.series`, etc.) should be handled by LFS.
- Adding a `.lfsconfig` file to set the LFS server URL.
- Simplifying the `.gitignore` file and removing exclusions for file types that are now tracked by LFS.

This setup ensures the repository remains lightweight while properly versioning large data files required for experiments and simulations.

Author: liblaf

.dvc/.gitignore

@@ -0,0 +1,21 @@
+# Images
+*.png filter=lfs diff=lfs merge=lfs -text
+
+# Videos
+*.avi filter=lfs diff=lfs merge=lfs -text
+*.mp4 filter=lfs diff=lfs merge=lfs -text
+
+# 3D Models
+*.glb filter=lfs diff=lfs merge=lfs -text
+*.landmarks.json filter=lfs diff=lfs merge=lfs -text
+*.msh filter=lfs diff=lfs merge=lfs -text
+*.obj filter=lfs diff=lfs merge=lfs -text
+*.ply filter=lfs diff=lfs merge=lfs -text
+*.series filter=lfs diff=lfs merge=lfs -text
+*.stl filter=lfs diff=lfs merge=lfs -text
+*.vti filter=lfs diff=lfs merge=lfs -text
+*.vtp filter=lfs diff=lfs merge=lfs -text
+*.vtu filter=lfs diff=lfs merge=lfs -text
+
+# Misc
+*.pvsm filter=lfs diff=lfs merge=lfs -text

.dvc/config

@@ -1,211 +1,42 @@
-# Created by https://www.toptal.com/developers/gitignore/api/python
-# Edit at https://www.toptal.com/developers/gitignore?templates=python
+# ref: <https://github.com/github/gitignore/blob/main/Python.gitignore>
+
+# Globally Useful gitignores
+*.log
+*.log.*
+playground/
 
-### Python ###
 # Byte-compiled / optimized / DLL files
 __pycache__/
-*.py[cod]
-*$py.class
-
-# C extensions
-*.so
 
 # Distribution / packaging
-.Python
-build/
-develop-eggs/
 dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
 
 # Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
+.cache/
 .coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
 .hypothesis/
 .pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
 
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
+# pixi
+.pixi/
 
 # Environments
-.env
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
+.venv/
 
 # mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-
-### Python Patch ###
-# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
-poetry.toml
+site/
 
-# ruff
+# Ruff stuff:
 .ruff_cache/
 
-# LSP config files
-# pyrightconfig.json
-
-# End of https://www.toptal.com/developers/gitignore/api/python
+# [Codecov](https://docs.codecov.com/docs/test-analytics#1-output-a-junit-xml-file-in-your-ci)
+junit.xml
 
-# pytest-codspeed
+# [CodSpeed](https://codspeed.io/)
 .codspeed/
 
-# pytest-benchmark
-.benchmarks/
-
+# [hatch-vcs](https://github.com/ofek/hatch-vcs)
 _version.py
-*.log.*
-junit.xml
-playground/
-
-fig/
-
-*.jpg
-*.pdf
-*.png
-*.svg
-
-*.avi
-*.mp4
-
-*.mtl
-*.obj
-*.ply
-*.pvd
-*.pvsm
-*.series
-*.stl
-*.vtk
-*.vtp
-*.vtu
 
+# [Cherries](https://github.com/liblaf/cherries)
 .cherries/
-result.json

.dvcignore

@@ -0,0 +1,5 @@
+# -*- mode: ini; -*-
+
+[lfs]
+locksverify = true
+url = ssh://git@forgejo.liblaf.me/liblaf/apple.git

.gitattributes

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dba7a3e3a9935804469f74e44957c2db0f30770732d190cd344a424264a93f6d
+size 2366