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FIrst of all, big congrats for all this work!
I've made a little experiment with 600 bact genomes (./ropebwt3 build -t10 -bo bwt.fmr), which seemed to be constructed correctly.
./ropebwt3 build -t10 -bo bwt.fmr
However, when I run the stat command, I get:
$ ./ropebwt3 stat bwt.fmr [M::mr_restore] ($, A, C, G, T, N) = (1490118, 791852006, 519124575, 519124575, 791852006, 160) 1490118 sequences 2623443440 symbols Assertion failed: (f->e != 0), function rb3_fmi_get_r, file fm-index.c, line 573. Abort trap: 6
System: OS X Version: b033029
The text was updated successfully, but these errors were encountered:
Due to my laziness, stat only works for the FMD encoding at the moment. You will need to convert FMR to FMD and then apply stat:
stat
ropebwt3 build -i bwt.fmr -do bwt.fmd # convert FMR to FMD ropebwt3 stat bwt.fmd
I will keep this issue open until I implement stat for the FMR encoding as well.
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FIrst of all, big congrats for all this work!
I've made a little experiment with 600 bact genomes (
./ropebwt3 build -t10 -bo bwt.fmr
), which seemed to be constructed correctly.However, when I run the stat command, I get:
System: OS X
Version: b033029
The text was updated successfully, but these errors were encountered: