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Bug/question with --force-all-parents --clades all

Status: Open.

#35 In lenaschimmel/sc2rf;

· MarieLataretu opened on Dec 1, 2022

Bridging the gap between sc2rf result and Pangolin X* lineages

Status: Open.

#34 In lenaschimmel/sc2rf;

· bioinforME opened on Jul 14, 2022

How to interpret BA.4/BA.5 list of mutations

Status: Open.

#32 In lenaschimmel/sc2rf;

· jpflorido opened on May 25, 2022

GISAID XT recombinant not detected by sc2rf

Status: Open.

#31 In lenaschimmel/sc2rf;

· BenjaminDelisle opened on May 16, 2022

Option to ignore shared substitutions

Status: Open.

#30 In lenaschimmel/sc2rf;

· ktmeaton opened on May 6, 2022

Terminal Ns not recognized as missing

Status: Open.

#29 In lenaschimmel/sc2rf;

· ktmeaton opened on May 6, 2022

ENH: Sort by breakpoint

Status: Open.

#26 In lenaschimmel/sc2rf;

· corneliusroemer opened on Apr 3, 2022

ENH: Accept MAPLE file as alternative to fasta

Status: Open.

#24 In lenaschimmel/sc2rf;

· corneliusroemer opened on Apr 1, 2022

ENH: Output full internal representation of analysis result for sharing without need for recomputation

Status: Open.

#22 In lenaschimmel/sc2rf;

· corneliusroemer opened on Mar 31, 2022

Have a look at the Δm, n, 2 statistic for breakpoint detection

Status: Open.

#21 In lenaschimmel/sc2rf;

· lenaschimmel opened on Mar 26, 2022

Add relevant primer bed files and make sure the bed format is correctly interpreted

Status: Open.

#20 In lenaschimmel/sc2rf;

· lenaschimmel opened on Mar 26, 2022

ENH: repeat gene legend every say 30 samples in case of long list

Status: Open.

#18 In lenaschimmel/sc2rf;

· corneliusroemer opened on Mar 24, 2022