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Commits on Mar 12, 2019

• Fix removePrimers bug

  benjjneb

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  3d9f3e5

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Commits on Jan 24, 2019

• Remove unexported bcinstall function

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  benjjneb

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• Remove data.table from the DESCRIPTION

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• Removed unexported mergePairsByID function

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Commits on Jan 8, 2019

• Add check for zero primer matches to dada2:::removePrimers

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Commits on Dec 17, 2018

• Bug fix for pool=TRUE processing

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Commits on Nov 8, 2018

• Bump version for new devel branch

  benjjneb

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Commits on Oct 10, 2018

• BiocManager transition

  benjjneb

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• NEWS and Bump Version

  benjjneb

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• Warn error rates weren't estimated only when selfConsist=TRUE

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• Updated expected errors link in vignette

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• Modify verbose behavior in dada(...)

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Commits on Sep 4, 2018

• Bump version

  benjjneb

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• Add trimRight to filtering functions

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Commits on Aug 31, 2018

• Renamed primer.fwd to orient.fwd in filter functions

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Commits on Aug 30, 2018

• replace BiocInstaller biocLite mentions with BiocManager

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Commits on Aug 27, 2018

• Added (unexpected) getSRR function.

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  benjjneb

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Commits on Aug 15, 2018

• collapseNoMismatch bug fix

  benjjneb

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• Drop warning on q>45

  benjjneb

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Commits on Aug 13, 2018

• Bump version to 1.9.1

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Commits on Aug 7, 2018

• Stub in PB errfun

  benjjneb

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Commits on Jul 30, 2018

• Handle duplicates in collapseNoMismatch

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• Remove length variation messages

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Commits on Jul 20, 2018

• Warn primer-matching w/ indels not supported

  benjjneb

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Commits on Jun 15, 2018

• pairedDerep returns empty data.frame if no consistent pairs in dada (benjjneb#485)

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  derele

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  benjjneb

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• Allow plotQualityProfile of a directory

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• Off by one kmer loop fix

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Commits on May 9, 2018

• Bump to 1.9.0 devel branch

  

  bcallah

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Commits on May 2, 2018

• Bump version to 1.8.0

  

  bcallah

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Commits on Apr 30, 2018

• bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

  

  vobencha

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• bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

  

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Commits on Apr 20, 2018

• Version bump

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  bcallah

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• Default OMEGA_C = 1e-40

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  bcallah

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Commits on Apr 15, 2018

• mergeSequenceTables accepts a vector of files/sequence tables (benjjneb#440)

  

  fanli-gcb

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Commits on Apr 3, 2018

• Added imports

  

  bcallah

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