_quarto.yml

project:
  type: website
  output-dir: docs
  render:
    - "*.qmd"
    - "!slides/"
  resources:
    - "files/"
    - "projects/"
    - "slides/*.html"
    - "slides/*.pdf"
    - "slides/img/"
    - "slides/libs/"
    - "slides/css/"
    - "slides/*_files/"

# See https://quarto.org/docs/projects/code-execution.html#freeze
execute:
  freeze: auto  # Re-render only when source changes

bibliography: files/bib/references.bib
csl: files/bib/apa.csl

website:
  title: "Experimental Designs and Statistical Methods"
  site-url: "https://lbelzile.github.io/edsm-f22"
  description: "Basic concepts for data collection planning; appropriate statistical analyses of these data and interpretation of results. Advantages and disadvantages of the various experimental designs."

  navbar:
    pinned: true
    background: "#ad1aac"
    right:
      - syllabus.qmd
      - schedule.qmd
      - text: "Content"
        file: content/index.qmd
      - text: "Evaluations"
        file: evaluations/index.qmd
      - text: "Examples"
        file: example/index.qmd
      - text: "Notes"
        href: "https://lbelzile.github.io/math80667a"
      - icon: slack
        href: "https://edsmf22.slack.com"
        aria-label: Slack
      - icon: box
        href: "https://lbelzile.github.io/hecedsm"
        aria-label: Datasets

  sidebar:
    - title: "Content"
      style: "docked"
      search: false
      foreground: "#ad1aac"
      contents:
        - section: "Overview"
          contents:
            - content/index.qmd
        - section: "Course content"
          contents:
            - text: "1: Introduction"
              file: content/01-content.qmd
            - text: "2: Hypothesis testing"
              file: content/02-content.qmd
            - text: "3: One way ANOVA"
              file: content/03-content.qmd
            - text: "4: Contrasts and multiple testing"
              file: content/04-content.qmd
            - text: "5: Complete factorial designs"
              file: content/05-content.qmd
            - text: "6: Multiway factorial designs"
              file: content/06-content.qmd
            - text: "7: Designs to reduce the error"
              file: content/07-content.qmd
            - text: "8: Effect sizes and power"
              file: content/08-content.qmd
            - text: "9: Repeated measures"
              file: content/09-content.qmd
            - text: "10: Intro to mixed models"
              file: content/10-content.qmd
            - text: "11: Intro to causal inference"
              file: content/11-content.qmd
            - text: "12: Linear mediation and moderation"
              file: content/12-content.qmd
            - text: "13: Nonparametric tests and count data"
              file: content/13-content.qmd
    - title: "Evaluations"
      style: "docked"
      search: false
      foreground: "#ad1aac"
      contents:
        - section: "Overview"
          contents:
            - evaluations/index.qmd
            - text: "Weekly check-in"
              file: evaluations/weekly-check-in.qmd
            - evaluations/paper-review.qmd
            - evaluations/final-exam.qmd
        - section: "Problem sets"
          contents:
            - evaluations/01-problem-set.qmd
            - evaluations/02-problem-set.qmd
            - evaluations/03-problem-set.qmd
            - evaluations/04-problem-set.qmd
            - evaluations/05-problem-set.qmd
            - evaluations/06-problem-set.qmd
            - evaluations/07-problem-set.qmd
            - evaluations/08-problem-set.qmd
            - evaluations/09-problem-set.qmd
            - evaluations/10-problem-set.qmd
            - evaluations/11-problem-set.qmd
            - evaluations/12-problem-set.qmd
    - title: "Examples"
      style: "docked"
      search: false
      foreground: "#ad1aac"
      contents:
        - section: "Overview"
          contents:
            - example/index.qmd
        - section: "Installation"
          contents:
            - text: "**R** and RStudio"
              file: example/installation.qmd
        - section: "Examples"
          contents:
            - text: "Introduction"
              file: example/introduction.qmd
         #   - text: "Null distributions"
         #     file: example/02-hypothesis_testing.qmd
            - text: "One-way ANOVA"
              file: example/onewayanova.qmd
            - text: "Two-way ANOVA"
              file: example/twowayanova.qmd
            - text: "Three-way ANOVA"
              file: example/threewayanova.qmd
            - text: "Analysis of covariance"
              file: example/ancova.qmd
            - text: "Effect size and power"
              file: example/effectsizepower.qmd
            - text: "Repeated measures ANOVA"
              file: example/repeated.qmd
            - text: "MANOVA"
              file: example/manova.qmd
            - text: "Linear mixed models"
              file: example/mixedmodel.qmd
            - text: "Linear causal mediation"
              file: example/linearmediation.qmd
            - text: "Nonparametric tests"
              file: example/nonparametric.qmd
            - text: "Count data"
              file: example/counts.qmd

  page-footer:
    left: |
      Content {{< fa brands creative-commons >}} {{< var course.copyright_year >}} by [{{< var instructor.name_no_title >}}]({{< var instructor.url >}})<br>
      Website template by [Dr. Andrew Heiss](https://www.andrewheiss.com/) under [MIT License](https://mit-license.org/)<br>
      All content licensed under a {{< fa brands creative-commons >}}
      {{< fa brands creative-commons-by >}} {{< fa brands creative-commons-nc >}}
      [Creative Commons Attribution-NonCommercial 4.0 International license (CC BY-NC 4.0)](https://creativecommons.org/licenses/by-nc/4.0/)
    right: |
      Made with {{< fa brands r-project >}} and [Quarto](https://quarto.org/)<br>
      [View the source at {{< fa brands github >}} GitHub]({{< var course.github >}})

format:
  html:
    theme:
      - litera
      - html/custom.scss
    toc: true
    highlight-style: github