Merge pull request #59 from lammpstutorials/change-notation-energy

used U, K, and E for the energies

Author: simongravelle

figures/CNT-breakable-stress-energy.png

@@ -1,5 +1,5 @@
 # LAMMPS Input File (License CC BY 4.0)
-# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer  
+# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer
 # The DOI will be added upon publication
 # Find more on GitHub: https://github.com/lammpstutorials
 

figures/CNT-unbreakable-length-energy.png

@@ -1,5 +1,5 @@
 # LAMMPS Input File (License CC BY 4.0)
-# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer  
+# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer
 # The DOI will be added upon publication
 # Find more on GitHub: https://github.com/lammpstutorials
 

figures/CNT-unbreakable-stress-strain.png

@@ -1,5 +1,5 @@
 # LAMMPS Input File (License CC BY 4.0)
-# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer  
+# By Simon Gravelle, Jacob R. Gissinger, and Axel Kohlmeyer
 # The DOI will be added upon publication
 # Find more on GitHub: https://github.com/lammpstutorials
 

figures/LJ-energy.png

@@ -2,10 +2,19 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 1,
    "id": "7c8c9669",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/home/simon/.local/lib/python3.12/site-packages/matplotlib/projections/__init__.py:63: UserWarning: Unable to import Axes3D. This may be due to multiple versions of Matplotlib being installed (e.g. as a system package and as a pip package). As a result, the 3D projection is not available.\n",
+      "  warnings.warn(\"Unable to import Axes3D. This may be due to multiple versions of \"\n"
+     ]
+    }
+   ],
    "source": [
     "import numpy as np\n",
     "import sys, os, git, lammps_logfile\n",
@@ -15,7 +24,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 2,
    "id": "3c0471c3",
    "metadata": {},
    "outputs": [],
@@ -30,7 +39,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 3,
    "id": "a28c02aa",
    "metadata": {},
    "outputs": [],
@@ -46,7 +55,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 4,
    "id": "2f5b9386",
    "metadata": {},
    "outputs": [],
@@ -58,7 +67,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 5,
    "id": "d6156a6b",
    "metadata": {},
    "outputs": [],
@@ -73,7 +82,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 6,
    "id": "7f303b27",
    "metadata": {},
    "outputs": [],