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fixed broken pdf
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lammps-tutorials.pdf

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lammps-tutorials.tex

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@@ -4455,7 +4455,7 @@ \subsubsection{Creating the system}
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pair_modify tail yes mix sixthpower
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special_bonds lj/coul 0 0 1
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\end{lstlisting}
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The \lmpcmd{class2} \lmpcmd{pair_styles} compute a 6/9 Lennard-Jones potential~\cite{sun1998compass}.
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The \lmpcmd{class2} \lmpcmd{pair\_styles} compute a 6/9 Lennard-Jones potential~\cite{sun1998compass}.
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The \textit{class2} bond, angle, dihedral, and improper styles are used as
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well, see the documentation for a description of the respective potential
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form they, each, prescribe.
@@ -4721,7 +4721,7 @@ \subsubsection{Simulating the reaction}
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run 25000
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\end{lstlisting}
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Here, the \lmpcmd{thermo_style custom} command is used
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Here, the \lmpcmd{thermo\_style custom} command is used
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to print the cumulative reaction counts which are calculated by \lmpcmd{fix rxn}
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and thus can be extracted from it.
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Run the simulation using LAMMPS. As the simulation progresses, polymer chains are

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