add colabfold mini to gateway (#727)

Author: thetechnocrat-dev

tools/colabfold/colabfold-mini-gateway.json

@@ -0,0 +1,33 @@
+{
+    "class": "CommandLineTool",
+    "name": "colabfold-miniV2 gateway 12GB memory",
+    "description": "Protein folding prediction using Colabfold (mini settings)",
+    "author": "",
+    "baseCommand": ["/bin/bash", "-c"],
+    "arguments": [
+      "colabfold_batch --templates --max-msa 32:64 --num-recycle 1 /inputs/sequence /outputs;"
+    ],
+    "dockerPull": "public.ecr.aws/p7l9w5o7/colabfold:latest",
+    "gpuBool": true,
+    "networkBool": true,
+    "memoryGB": 12,
+    "inputs": {
+      "sequence": {
+        "type": "File",
+        "item": "",
+        "glob": ["*.fasta"]
+      }
+    },
+    "outputs": {
+      "best_folded_protein": {
+        "type": "File",
+        "item": "",
+        "glob": ["*rank_1*.pdb"]
+      },
+      "all_folded_proteins": {
+        "type": "Array",
+        "item": "File",
+        "glob": ["*rank*.pdb"]
+      }
+    }
+}