Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 204 followers
- Stanford University
- https://kundajelab.github.io/
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chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
Repositories
Showing 10 of 192 repositories
- e2g-frontend Public
- ENCODE_atlas_bpnet_model_family_files Public
Machine-readable index of downloadable ENCODE-portal files for the Kundaje-lab ENCODE Atlas BPNet-family models (BPNet / ChromBPNet / ProCapNet / ReporterNet): accession x object-type -> ENCFF.
- MotifCompendium Public
- chrombpnet Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
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