Error "The x argument of as_tibble() can't be missing as of tibble 3.0.0." when using CombinedConfidence function

[viictoriaeriksson]

Hi,
I have tried to use the CombinedConfidence function. However, I get the error "The x argument of as_tibble() can't be missing as of tibble 3.0.0." from the " ScoreTable <- as_tibble()" in SiriusScores1 and SiriusScores2 and have not manage to get around the problem.
Therefore, I was wondering if you have a solution for how to solve this when a newer package version of tibble is used.

Thank in advance! :)

[PilleriinPeets]

Hello. I have lately had the same problems with new R versions when using as_tibble() function. Can you try changing the as_tibble() into function tibble(). Please let me know if it works for you. Then I will also change the file in GitHub.

[viictoriaeriksson]

Hi, Thank you for your reply!
The error was resolved by changing to tibble() instead. However, now I receive another error instead that says:
"Error in select():
! Can't select columns that don't exist.
✖ Column rank doesn't exist.
Run rlang::last_trace() to see where the error occurred.
Warning message:
There was 1 warning in mutate().
ℹ In argument: id = as.double(id).
Caused by warning:
! NAs introduced by coercion "

When I try CombinedConfidence function I have it as "conf_level <- CombinedConfidence(folderwithSIRIUSfiles, maxrank = 1)". Not sure if the new error is due to me not using the function properly or it is something else I have missed.