README.md

NYU Bioinformatics Capstone Project: VARify

Contents

• Notebook: notebook/varify_notebook.ipynb
• Test Data: data/test/
• Report Script: script/main.py
• Utility File: script/utility.py

How to use

• --in_pileup mpileup file in txt format
• --in_snpeff snpeff-like table in txt format

python3 '../script/main.py' --in_pileup <mpileup_file> --in_snpeff <snpefftable_file>