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12 followers · 32 following

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Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Organizations

@TRON-Bioinformatics

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khersameesh24/README.md

Hi, I'm Sameesh 👋

Bioinformatics Engineer • Workflow Engineer • Research Software Developer

🚀 About Me

  • 🔭 Currently working on scalable workflows to analyze spatial omics (Xenium)
    → nf-core/spatialxe
  • 🧠 Exploring deep learning methods for image segmentation
  • ⚙️ Passionate about bioinformatics pipelining, scaling, deploying workflows & code optimization
  • 💬 Happy to talk about Nextflow, automation, cloud/HPC, and spatialomics pipelines
  • 📫 Reach me at: khersameesh24@gmail.com

🧰 Tech Stack (Quick Overview)

Languages & Tools:
Python • R • Bash • Git • Conda

Bioinformatics:
Nextflow • nf-core • Snakemake

DevOps / Cloud / HPC:
Docker • Singularity • GitHub Actions • AWS (Lambda, Batch, EC2)

🌐 Socials

LinkedIn

📊 GitHub Stats


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  1. spatialxe spatialxe Public

    Forked from nf-core/spatialxe

    Nextflow 1

  2. TRON-Bioinformatics/VariantMedium TRON-Bioinformatics/VariantMedium Public

    Sensitive and generalizable somatic point mutation calling with 3D DenseNets

    Python 2 2

  3. EasyFuse EasyFuse Public

    Forked from TRON-Bioinformatics/EasyFuse

    EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

    Python

  4. modules modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 1