Various R functions to help with analyses using Shannon's information theory and graph theory.
Functions:
CoordCMDS: classical multidimensional scaling from distance matrix
genJSD: generalized Jensen-Shannon divergence
MakeDistMatrix: distance matrix from data.table
MakeNonRedundantPairs: helps with pairwise combinatorial analyses of stuff
RadialNudge: for visualizing multiple 'shells' of nodes in a circular graph
If you don't already have devtools:
install.packages("devtools")
Install:
library(devtools)
install_github("wkc1986/infograf")
Use:
library(infograf)