Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

Changed

Automatic conversion of DNASequence to RNASequence when translating sequences.
Add alternative_start keyword argument to translate().
Add abstract type for kmer iterators
🐎 Faster kmer iteration

1.0.0 - 2018-08-23

Added

Issue and PR templates.
Code of Conduct and Contributing files.
A changelog file.
Support for julia v0.7 and v1.0.

Removed

❗ Support for julia v0.6.

0.8.3 - 2018-02-28

Changed

Fix the sequence method so as the sequence type can be specified, allowing type-stable efficient code generation.

0.8.2 - 2018-02-19

Changed

A bug fix for FASTA.Record writing where the width parameter of a FASTA.Writer is less than or equal to zero.

0.8.1 - 2017-11-10

Changed

Update documentation generation.
Fixes to type definition keywords.
Bit-parallel GC counting.

0.8.0 - 2017-08-16

Added

Position weight matrix search functionality.
A generalised composition method.
typemin and typemax methods for Kmer types.

Changed

MinHash function now generalised to Reader types.
Updates to doc tests.

0.7.0 - 2017-07-28

Added

Support for julia v0.6 only.

Removed

❗ Dropped support for julia v0.5.

0.6.3 - 2017-07-06

Changed

Iterators.jl is not longer used as a dependency in favour of Itertools.jl.

0.6.1 - 2017-06-20

Changed

Bug-fix for site-counting algorithm.

0.6.0 - 2017-06-14

Added

⬆️ Compatibility with julia v0.6.
The ungap and ungap! methods, that are shorthand for filtering gaps from biological sequences.

Changed

Bug fixes for Kmer iteration that were caused by gaps in 4-bit encoded sequences.

0.5.0 - 2017-06-07

Added

All files pertaining to the old Bio.Seq module.