v0.15.7

2024-01-26

Added

• Misc: Sphinx documentation to support mermaid markdown images, reflect CHANGELOG section, add more emojis.

Changed

• Misc: Update SEO image.
• Misc: Fix Sphinx documentation font size difference between web and mobile, include last updated date.
• Misc: Upgrade package versions in pre-commit hook.

Fixed

• Tree Exporter: hprint_tree and hyield_tree to be compatible with BinaryNode where child nodes can be None type.

What's Changed

• Update SEO image by @kayjan in #166
• Fixed: Sphinx documentation CSS by @kayjan in #167
• Fixed: Sphinx documentation CSS by @kayjan in #168
• Fixed: Sphinx documentation CSS for table padding for tree-modify by @kayjan in #169
• Changed: Sphinx documentation theme configuation by @kayjan in #170
• Enhance docs by @kayjan in #171
• Enhance sphinx by @kayjan in #172
• Enhance sphinx by @kayjan in #173
• Changed: Rename docs to docs_sphinx by @kayjan in #174
• Fixed: hprint and hyield (and hshow) to support binary node by @kayjan in #176

Full Changelog: 0.15.6...0.15.7

v0.15.6

2024-01-20

Added

• DAGNode: Able to access and delete node children via name with square bracket accessor with __getitem__ and __delitem__ magic methods.
• DAGNode: Able to delete all children for a node.
• DAGNode: Able to check if node contains child node with __contains__ magic method.
• DAGNode: Able to iterate the node to access children with __iter__ magic method.

Changed

• Tree Search: Modify type hints to include DAGNode for find_children, find_child, and find_child_by_name.
• Misc: Neater handling of strings for tests.
• Misc: Documentation enhancement to split README into multiple files.
• Misc: New Sphinx documentation theme.

What's Changed

• Enhance dagnode by @kayjan in #164
• Change Sphinx theme by @kayjan in #165

Full Changelog: 0.15.5...0.15.6

v0.15.5

2024-01-17

Changed

• Misc: Neater handling of strings for tests.
• Misc: Better examples for merging trees and weighted trees in Sphinx documentation.
• Misc: Fix links and introduce unreleased segment in CHANGELOG.

What's Changed

• Changed: Neater handling of strings for tests by @kayjan in #161
• Changed: Example for sphinx examples for merging trees and weighted t… by @kayjan in #162
• V0.15.5 by @kayjan in #163

Full Changelog: 0.15.4...0.15.5

v0.15.4

2024-01-11

Changed

• Tree Exporter: hprint_tree and hyield_tree to allow hiding names of intermediate node.

Fixed

• Tree Constructor: newick_to_tree to handle invalid closing and use of apostrophe.
• Tree Exporter: tree_to_newick to handle special characters by wrapping them in apostrophe.

What's Changed

• Fixed: Highlight lines in README by @kayjan in #157
• Serialize newick export by @kayjan in #158
• Hyield add arg by @kayjan in #159
• v0.15.4 by @kayjan in #160

Full Changelog: 0.15.3...0.15.4

v0.15.3

2024-01-08

Added

• Tree Helper: get_subtree method to retrieve subtree.

What's Changed

• Added: get_subtree method + docstring examples + update README by @kayjan in #156

Full Changelog: 0.15.2...0.15.3

v0.15.2

2024-01-08

Added

• Tree Exporter: hprint_tree and hyield_tree to print and retrieve results for tree in horizontal orientation.
• Node: Added hshow method to print tree in horizontal orientation to console.

What's Changed

• Feature/hprint tree by @kayjan in #153
• V0.15.1 by @kayjan in #154
• v0.15.2 by @kayjan in #155

Full Changelog: 0.15.1...0.15.2

v0.15.1

2024-01-05

Added

• Tree Constructor: newick_to_tree to convert Newick notation to tree.

Changed

• Tree Exporter: tree_to_newick to accept more parameters to parse length and attributes.

Fixed

• Misc: Automated doctest setup to use os operations instead of string operations.

What's Changed

• Enhance newick by @kayjan in #146
• Fixed: conf.py reusable os codes by @kayjan in #147
• Abstract newick by @kayjan in #148
• Newick changes by @kayjan in #149
• Feature newick to tree by @kayjan in #150
• V0.15.1 by @kayjan in #151
• v0.15.1 by @kayjan in #152

Full Changelog: 0.15.0...0.15.1

v0.15.0

2024-01-02

Added

• Tree Exporter: Export to Newick notation with tree_to_newick.

Changed

• Tree Helper: Pruning tree to support pruning of multiple paths (accepts list of string).
• Tree Helper: Pruning tree to support pruning of an exact path (i.e., remove descendants) with exact parameter, default is prune and keep descendants.

What's Changed

• Changed: Updated examples in README by @kayjan in #141
• Update CHANGELOG.md by @kayjan in #142
• Enhance pruning by @kayjan in #143
• v0.15.0 by @kayjan in #144
• Changed: Update README to show newick export examples by @kayjan in #145

Full Changelog: 0.14.8...0.15.0

v0.14.8

2023-12-25

Changed

• Tree Modifier: Enhance documentation examples.
• Workflow To Do App: Change import and export logic.
• Misc: Organize assets folder based on whether it originated from README, docstrings, or sphinx documentation.
• Misc: Rename functions in plot.py utils file for coverage report.

Fixed

• Misc: Fixed doctests and automate doctest checks.

What's Changed

• Update docs.yml by @kayjan in #136
• Update docs.yml by @kayjan in #137
• Enhance docstring by @kayjan in #138
• Changed: Enhance docstring examples for tree modify functions by @kayjan in #139
• Enhance docstr by @kayjan in #140

Full Changelog: 0.14.7...0.14.8

v0.14.7

2023-12-22

Changed

• Tree Helper: get_tree_diff enhanced to compare tree attributes by taking in attr_list parameter, and indicates difference with (~).

Fixed

• Tree Helper: get_tree_diff compare tree structure by considering all nodes (previously only consider leaf nodes).

What's Changed

• Changed: get_tree_diff method to compare structure and attributes by @kayjan in #134
• V0.14.7 by @kayjan in #135

Full Changelog: 0.14.6...0.14.7