Merge pull request #196 from kayjan/benchmark-precision

Benchmark precision

Author: kayjan

.github/workflows/codecov.yml

@@ -60,6 +60,10 @@ jobs:
           github-token: ${{ secrets.GITHUB_TOKEN }}
           comment-always: true
           summary-always: true
+      - name: Clear previous benchmark report
+        if: ${{ github.event_name == 'push' }}
+        run: |
+          gh cache delete ${{ runner.os }}-benchmark
       - name: Upload coverage to Codecov
         if: ${{ github.event_name == 'push' }}
         uses: codecov/codecov-action@v3

pyproject.toml

@@ -74,11 +74,8 @@ mypy-type = "mypy bigtree"
 [tool.hatch.envs.docs]
 dependencies = [
   "autodocsumm==0.2.11",
-  "myst-parser~=1.0.0",
   "IPython",
-  "pandas",
-  "pydot",
-  "Pillow",
+  "myst-parser~=1.0.0",
   "sphinxcontrib-mermaid==0.9.2",
   "sphinxemoji==0.2.0",
   "sphinx-material==0.0.36"
@@ -93,18 +90,15 @@ clean-html = "sphinx-build -M html docs_sphinx/source docs_sphinx/build & sphinx
 
 [tool.hatch.envs.mkdocs]
 dependencies = [
+  "black",
+  "docstr-coverage",
+  "IPython",
   "mkdocs==1.5.3",
   "mkdocs-material[imaging]==9.5.5",
   "mdx_truly_sane_lists",
   "mkdocstrings[python]",
-  "docstr-coverage",
   "mkdocs-glightbox",
   "termynal",
-  "black",
-  "IPython",
-  "pandas",
-  "pydot",
-  "Pillow",
 ]
 
 [tool.hatch.envs.mkdocs.scripts]

tests/conftest.py

@@ -537,6 +537,18 @@ def phylogenetic_tree():
     return root
 
 
+def pytest_benchmark_scale_unit(config, unit, benchmarks, best, worst, sort):
+    prefix = ""
+    if unit == "seconds":
+        scale = 1.0
+    elif unit == "operations":
+        scale = 0.001
+    else:
+        raise RuntimeError("Unexpected measurement unit %r" % unit)
+
+    return prefix, scale
+
+
 def assert_print_statement(func, expected, *args, **kwargs):
     captured_output = io.StringIO()
     sys.stdout = captured_output