BioLiP_update.sh

#!/bin/bash
#cd /nfs/amino-home/zhanglabs/BioLiP2
readlink -f $0
FILE=`readlink -f $0`
rootdir=`dirname $FILE`
cd $rootdir
pwd

#### The following scripts need internet connection ####
echo ./script/rsyncPDB.sh
./script/rsyncPDB.sh

echo ./script/download_sifts.pl
./script/download_sifts.pl

echo ./script/download_csa.pl
#./script/download_csa.pl     # only need to run annually

echo ./script/download_bind.pl
./script/download_bind.pl     # only need to run every few months

echo ./script/download_moad.pl
#./script/download_moad.pl    # only need to run annually

echo ./script/download_ligand.pl
./script/download_ligand.pl
./script/curate_smiles.pl

#### This following script does NOT need internet connection ####
echo ./script/curate_pdb.pl
./script/curate_pdb.pl


#### The following script needs internet connection ####
echo ./script/download_pubmed.pl
./script/download_pubmed.pl

#### The following script script does NOT need internet connection ####
echo ./script/curate_ligand.pl
./script/curate_ligand.pl

echo ./script/make_weekly.pl
./script/make_weekly.pl

echo ./script/make_nr.pl
./script/make_nr.pl

echo ./script/make_rSS.pl
./script/make_rSS.pl

echo ./script/make_EC.pl
./script/make_EC.pl

echo ./script/curate_GO.pl
./script/curate_GO.pl

echo ./script/make_foldseek.pl
./script/make_foldseek.pl

#### The following script needs internet connection ####
echo ./script/download_rhea.pl
./script/download_rhea.pl